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Titanium dioxide (TiO2) doped with sulfur (S) was synthesized by oxidation annealing of titanium disulfide (TiS2). According to the x-ray diffraction patterns, TiS2 turned into anatase TiO2 when annealed at 600 °C. The residual S atoms occupied O-atom sites in TiO2 to form Ti–S bonds. The S doping caused the absorption edge of TiO2 to be shifted into the lower-energy region. Based on the theoretical analyses using ab initio band calculations, mixing of the S 3p states with the valence band was found to contribute to the band gap narrowing.

We report anisotropic magnetoresistance in $\mathrm{Pt}|{\mathrm{Y}}_{3}{\mathrm{Fe}}_{5}{\mathrm{O}}_{12}$ bilayers. In spite of ${\mathrm{Y}}_{3}{\mathrm{Fe}}_{5}{\mathrm{O}}_{12}$ being a very good electrical insulator, the resistance of the Pt layer reflects its magnetization direction. The effect persists even when a Cu layer is inserted between Pt and ${\mathrm{Y}}_{3}{\mathrm{Fe}}_{5}{\mathrm{O}}_{12}$, excluding the contribution of induced equilibrium magnetization at the interface. Instead, we show that the effect originates from concerted actions of the direct and inverse spin Hall effects and therefore call it ``spin Hall magnetoresistance.''

We present a theory of the spin Hall magnetoresistance (SMR) in multilayers made from an insulating ferromagnet F, such as yttrium iron garnet (YIG), and a normal metal N with spin-orbit interactions, such as platinum (Pt). The SMR is induced by the simultaneous action of spin Hall and inverse spin Hall effects and therefore a nonequilibrium proximity phenomenon. We compute the SMR in F$|$N and F$|$N$|$F layered systems, treating N by spin-diffusion theory with quantum mechanical boundary conditions at the interfaces in terms of the spin-mixing conductance. Our results explain the experimentally observed spin Hall magnetoresistance in N$|$F bilayers. For F$|$N$|$F spin valves we predict an enhanced SMR amplitude when magnetizations are collinear. The SMR and the spin-transfer torques in these trilayers can be controlled by the magnetic configuration.

Only graminaceous monocots possess the Strategy II iron (Fe)-uptake system in which Fe is absorbed by roots as an Fe3+-phytosiderophore. In spite of being a Strategy II plant, however, rice (Oryza sativa) contains the previously identified Fe2+ transporter OsIRT1. In this study, we isolated the OsIRT2 gene from rice, which is highly homologous to OsIRT1. Real-time PCR analysis revealed that OsIRT1 and OsIRT2 are expressed predominantly in roots, and these transporters are induced by low-Fe conditions. When expressed in yeast (Saccharomyces cerevisiae) cells, OsIRT2 cDNA reversed the growth defects of a yeast Fe-uptake mutant. This was similar to the effect of OsIRT1 cDNA. OsIRT1- and OsIRT2-green fluorescent protein fusion proteins localized to the plasma membrane when transiently expressed in onion (Allium cepa L.) epidermal cells. OsIRT1 promoter-GUS analysis revealed that OsIRT1 is expressed in the epidermis and exodermis of the elongating zone and in the inner layer of the cortex of the mature zone of Fe-deficient roots. OsIRT1 expression was also detected in the ccompanion cells. Analysis using the positron-emitting tracer imaging system showed that rice plants are able to take up both an Fe3+-phytosiderophore and Fe2+. This result indicates that, in addition to absorbing an Fe3+-phytosiderophore, rice possesses a novel Fe-uptake system that directly absorbs the Fe2+, a strategy that is advantageous for growth in submerged conditions.

Views Icon Views Article contents Figures & tables Video Audio Supplementary Data Peer Review Share Icon Share Twitter Facebook Reddit LinkedIn Tools Icon Tools Reprints and Permissions Cite Icon Cite Search Site Citation Ken-ichi Uchida, Hiroto Adachi, Takeru Ota, Hiroyasu Nakayama, Sadamichi Maekawa, Eiji Saitoh; Observation of longitudinal spin-Seebeck effect in magnetic insulators. Appl. Phys. Lett. 25 October 2010; 97 (17): 172505. https://doi.org/10.1063/1.3507386 Download citation file: Ris (Zotero) Reference Manager EasyBib Bookends Mendeley Papers EndNote RefWorks BibTex toolbar search Search Dropdown Menu toolbar search search input Search input auto suggest filter your search All ContentAIP Publishing PortfolioApplied Physics Letters Search Advanced Search |Citation Search

BACKGROUND: Differential expression analysis based on "next-generation" sequencing technologies is a fundamental means of studying RNA expression. We recently developed a multi-step normalization method (called TbT) for two-group RNA-seq data with replicates and demonstrated that the statistical methods available in four R packages (edgeR, DESeq, baySeq, and NBPSeq) together with TbT can produce a well-ranked gene list in which true differentially expressed genes (DEGs) are top-ranked and non-DEGs are bottom ranked. However, the advantages of the current TbT method come at the cost of a huge computation time. Moreover, the R packages did not have normalization methods based on such a multi-step strategy. RESULTS: TCC (an acronym for Tag Count Comparison) is an R package that provides a series of functions for differential expression analysis of tag count data. The package incorporates multi-step normalization methods, whose strategy is to remove potential DEGs before performing the data normalization. The normalization function based on this DEG elimination strategy (DEGES) includes (i) the original TbT method based on DEGES for two-group data with or without replicates, (ii) much faster methods for two-group data with or without replicates, and (iii) methods for multi-group comparison. TCC provides a simple unified interface to perform such analyses with combinations of functions provided by edgeR, DESeq, and baySeq. Additionally, a function for generating simulation data under various conditions and alternative DEGES procedures consisting of functions in the existing packages are provided. Bioinformatics scientists can use TCC to evaluate their methods, and biologists familiar with other R packages can easily learn what is done in TCC. CONCLUSION: DEGES in TCC is essential for accurate normalization of tag count data, especially when up- and down-regulated DEGs in one of the samples are extremely biased in their number. TCC is useful for analyzing tag count data in various scenarios ranging from unbiased to extremely biased differential expression. TCC is available at http://www.iu.a.u-tokyo.ac.jp/~kadota/TCC/ and will appear in Bioconductor (http://bioconductor.org/) from ver. 2.13.

Abscisic acid (ABA) is one of the most important phytohormones involved in abiotic stress responses, seed maturation, germination, and senescence. ABA is predominantly produced in vascular tissues and exerts hormonal responses in various cells, including guard cells. Although ABA responses require extrusion of ABA from ABA-producing cells in an intercellular ABA signaling pathway, the transport mechanisms of ABA through the plasma membrane remain unknown. Here we isolated an ATP-binding cassette (ABC) transporter gene, AtABCG25, from Arabidopsis by genetically screening for ABA sensitivity. AtABCG25 was expressed mainly in vascular tissues. The fluorescent protein-fused AtABCG25 was localized at the plasma membrane in plant cells. In membrane vesicles derived from AtABCG25-expressing insect cells, AtABCG25 exhibited ATP-dependent ABA transport. The AtABCG25-overexpressing plants showed higher leaf temperatures, implying an influence on stomatal regulation. These results strongly suggest that AtABCG25 is an exporter of ABA and is involved in the intercellular ABA signaling pathway. The presence of the ABA transport mechanism sheds light on the active control of multicellular ABA responses to environmental stresses among plant cells.

The spin Seebeck effect refers to the generation of a spin voltage caused by a temperature gradient in a ferromagnet, which enables the thermal injection of spin currents from the ferromagnet into an attached nonmagnetic metal over a macroscopic scale of several millimeters. The inverse spin Hall effect converts the injected spin current into a transverse charge voltage, thereby producing electromotive force as in the conventional charge Seebeck device. Recent theoretical and experimental efforts have shown that the magnon and phonon degrees of freedom play crucial roles in the spin Seebeck effect. In this paper, we present the theoretical basis for understanding the spin Seebeck effect and briefly discuss other thermal spin effects.

In mammals, toxic electrolytes of endogenous and exogenous origin are excreted through the urine and bile. Before excretion, these compounds cross numerous cellular membranes in a transporter-mediated manner. However, the protein transporters involved in the final excretion step are poorly understood. Here, we show that MATE1, a human and mouse orthologue of the multidrug and toxin extrusion family conferring multidrug resistance on bacteria, is primarily expressed in the kidney and liver, where it is localized to the luminal membranes of the urinary tubules and bile canaliculi. When expressed in HEK293 cells, MATE1 mediates H(+)-coupled electroneutral exchange of tetraethylammonium and 1-methyl-4-phenylpyridinium. Its substrate specificity is similar to those of renal and hepatic H(+)-coupled organic cations (OCs) export. Thus, MATE1 appears to be the long searched for polyspecific OC exporter that directly transports toxic OCs into urine and bile.

In the original version of this manuscript, an error was introduced on pp352. '2.7nb:1.6nb' has been corrected to '2.4nb:1.3nb' in the current online and printed version. doi:10.1093/ptep/ptz106.

The inverse spin-Hall effect (ISHE) induced by the spin pumping has been investigated systematically in simple ferromagnetic/paramagnetic bilayer systems. The spin pumping driven by ferromagnetic resonance injects a spin current into the paramagnetic layer, which gives rise to an electromotive force transverse to the spin current using the ISHE in the paramagnetic layer. In a Ni81Fe19/Pt film, we found an electromotive force perpendicular to the applied magnetic field at the ferromagnetic resonance condition. The spectral shape of the electromotive force is well reproduced using a simple Lorentz function, indicating that the electromotive force is due to the ISHE induced by the spin pumping; extrinsic magnetogalvanic effects are eliminated in this measurement. The electromotive force varies systematically by changing the microwave power, magnetic-field angle, and film size, being consistent with the prediction based on the Landau–Lifshitz–Gilbert equation combined with the models of the ISHE and spin pumping. The electromotive force was observed also in a Pt/Y3Fe4GaO12 film, in which the metallic Ni81Fe19 layer is replaced by an insulating Y3Fe4GaO12 layer, supporting that the spin-pumping-induced ISHE is responsible for the observed electromotive force.

The convincing candidate event of the isotope of the 113th element, 278 113, and its daughter nuclei, 274 111 and 270 Mt, were observed, for the first time, in the 209 Bi + 70 Zn reaction at a beam energy of 349.0 MeV with a total dose of 1.7 ×10 19 . Alpha decay energies and decay times of the candidates, 278 113, 274 111, and 270 Mt, were (11.68 ±0.04 MeV, 0.344 ms), (11.15 ±0.07 MeV, 9.26 ms), and (10.03 ±0.07 MeV, 7.16 ms), respectively. The production cross section of the isotope was deduced to be 55 +150 -45 fb (10 -39 cm 2 ).

We experimentally investigate and quantitatively analyze the spin Hall magnetoresistance effect in ferromagnetic insulator/platinum and ferromagnetic insulator/nonferromagnetic metal/platinum hybrid structures. For the ferromagnetic insulator, we use either yttrium iron garnet, nickel ferrite, or magnetite and for the nonferromagnet, copper or gold. The spin Hall magnetoresistance effect is theoretically ascribed to the combined action of spin Hall and inverse spin Hall effect in the platinum metal top layer. It therefore should characteristically depend upon the orientation of the magnetization in the adjacent ferromagnet and prevail even if an additional, nonferromagnetic metal layer is inserted between Pt and the ferromagnet. Our experimental data corroborate these theoretical conjectures. Using the spin Hall magnetoresistance theory to analyze our data, we extract the spin Hall angle and the spin diffusion length in platinum. For a spin-mixing conductance of $4\ifmmode\times\else\texttimes\fi{}{10}^{14}\phantom{\rule{0.28em}{0ex}}{\ensuremath{\Omega}}^{\ensuremath{-}1}{\mathrm{m}}^{\ensuremath{-}2}$, we obtain a spin Hall angle of $0.11\ifmmode\pm\else\textpm\fi{}0.08$ and a spin diffusion length of $(1.5\ifmmode\pm\else\textpm\fi{}0.5)\phantom{\rule{0.28em}{0ex}}\mathrm{nm}$ for Pt in our thin-film samples.

Abstract A sulfur (S)-doped titanium dioxide (TiO2) photocatalyst was synthesized by oxidative annealing of titanium disulfide (TiS2). TiS2 turned into anatase TiO2 when annealed in air. The residual S atoms occupied O-atom sites in the TiO2 to form Ti–S bonds. The S doping caused the absorption edge of TiO2 to be shifted into the lower energy region. Consequently, methylene blue adsorbed on the S-doped TiO2 was photocatalytically decomposed by visible light irradiation.

We present calculations of fission properties for heavy elements. The calculations are based on the macroscopic-microscopic finite-range liquid-drop model with a 2002 parameter set. For each nucleus we have calculated the potential energy in three different shape parametrizations: (1) for 5 009 325 different shapes in a five-dimensional deformation space given by the three-quadratic-surface parametrization, (2) for 10 850 different shapes in a three-dimensional deformation space spanned by ${\ensuremath{\epsilon}}_{2}$, ${\ensuremath{\epsilon}}_{4}$, and $\ensuremath{\gamma}$ in the Nilsson perturbed-spheroid parametrization, supplemented by a densely spaced grid in ${\ensuremath{\epsilon}}_{2}$, ${\ensuremath{\epsilon}}_{3}$, ${\ensuremath{\epsilon}}_{4}$, and ${\ensuremath{\epsilon}}_{6}$ for axially symmetric deformations in the neighborhood of the ground state, and (3) an axially symmetric multipole expansion of the shape of the nuclear surface using ${\ensuremath{\beta}}_{2}$, ${\ensuremath{\beta}}_{3}$, ${\ensuremath{\beta}}_{4}$, and ${\ensuremath{\beta}}_{6}$ for intermediate deformations. For a fissioning system, it is always possible to define uniquely one saddle or fission threshold on the optimum trajectory between the ground state and separated fission fragments. We present such calculated barrier heights for 1585 nuclei from $Z=78$ to $Z=125$. Traditionally, actinide barriers have been characterized in terms of a ``double-humped'' structure. Following this custom we present calculated energies of the first peak, second minimum, and second peak in the barrier for 135 actinide nuclei from Th to Es. However, for some of these nuclei which exhibit a more complex barrier structure, there is no unique way to extract a double-humped structure from the calculations. We give examples of such more complex structures, in particular the structure of the outer barrier region near $^{232}\mathrm{Th}$ and the occurrence of multiple fission modes. Because our complete results are too extensive to present in a paper of this type, our aim here is limited: (1) to fully present our model and the methods for determining the structure of the potential-energy surface, (2) to present fission thresholds for a large number of heavy elements, (3) to compare our results with the two-humped barrier structure deduced from experiment for actinide nuclei, and (4) to compare to additional fission-related data and other fission models.

Flavonoid compounds such as anthocyanins and proanthocyanidins (PAs; so-called condensed tannins) have a multitude of functions in plants. They must be transported from the site of synthesis in the cytosol to their final destination, the vacuoles. Three models have been proposed for sequestering anthocyanins in vacuoles, but the transport machinery for PAs is poorly understood. Novel Arabidopsis mutants, transparent testa 19 (tt19), which were induced by ion beam irradiation, showed a great reduction of anthocyanin pigments in the vegetative parts as well as brown pigments in the seed coat. The TT19 gene was isolated by chromosome walking and a candidate gene approach, and was shown to be a member of the Arabidopsis glutathione S-transferase (GST) gene family. Heterologous expression of a putative ortholog, petunia anthocyanin 9 (AN9), in tt19 complemented the anthocyanin accumulation but not the brown pigmentation in the seed coat. This suggests that the TT19 gene is required for vacuolar uptake of anthocyanins into vacuoles, but that it has also a function different from that of AN9. The depositional pattern of PA precursors in the mutant was different from that in the wild type. These results indicate that TT19 participates in the PA pathway as well as the anthocyanin pathway of Arabidopsis. As involvement of GST in the PA pathway was previously considered unlikely, the function of TT19 in the PA pathway is also discussed in the context of the putative transporter for PA precursors.

The movement of chromosomes that precedes meiosis was observed in living cells of fission yeast by fluorescence microscopy. Further analysis by in situ hybridization revealed that the telomeres remain clustered at the leading end of premeiotic chromosome movement, unlike mitotic chromosome movement in which the centromere leads. Once meiotic chromosome segregation starts, however, centromeres resume the leading position in chromosome movement, as they do in mitosis. Although the movement of the telomere first has not been observed before, the clustering of telomeres is reminiscent of the bouquet structure of meiotic-prophase chromosomes observed in higher eukaryotes, which suggests that telomeres perform specific functions required for premeiotic chromosomal events generally in eukaryotes.

A nuclidic mass formula composed of a gross term, an even-odd term and a shell term is presented as a revised version of the mass formula constructed by the present authors and published in 2000. The gross term has almost the same functional form as in the previous formula, but the parameter values in it are somewhat different. The even-odd term is treated more carefully, and a considerable improvement is realized. The shell term is exactly the same as the previous one; it was obtained using spherical single-particle potentials and by treating the deformed nucleus as a superposition of spherical nuclei. The new mass formula is applicable to nuclei with Z 2 and N 2. The root-mean-square deviation from experimental masses is 666.7 keV, which is less than that of the previous mass formula, 689.8 keV.

The maximum normalized beta achieved in long-pulse tokamak discharges at low collisionality falls significantly below both that observed in short pulse discharges and that predicted by the ideal MHD theory. Recent long-pulse experiments, in particular those simulating the International Thermonuclear Experimental Reactor (ITER) [M. Rosenbluth et al., Plasma Physics and Controlled Nuclear Fusion (International Atomic Energy Agency, Vienna, 1995), Vol. 2, p. 517] scenarios with low collisionality νe*, are often limited by low-m/n nonideal magnetohydrodynamic (MHD) modes. The effect of saturated MHD modes is a reduction of the confinement time by 10%–20%, depending on the island size and location, and can lead to a disruption. Recent theories on neoclassical destabilization of tearing modes, including the effects of a perturbed helical bootstrap current, are successful in explaining the qualitative behavior of the resistive modes and recent results are consistent with the size of the saturated islands. Also, a strong correlation is observed between the onset of these low-m/n modes with sawteeth, edge localized modes (ELM), or fishbone events, consistent with the seed island required by the theory. We will focus on a quantitative comparison between both the conventional resistive and neoclassical theories, and the experimental results of several machines, which have all observed these low-m/n nonideal modes. This enables us to single out the key issues in projecting the long-pulse beta limits of ITER-size tokamaks and also to discuss possible plasma control methods that can increase the soft β limit, decrease the seed perturbations, and/or diminish the effects on confinement.

ATP is a major chemical transmitter in purinergic signal transmission. Before secretion, ATP is stored in secretory vesicles found in purinergic cells. Although the presence of active transport mechanisms for ATP has been postulated for a long time, the proteins responsible for its vesicular accumulation remains unknown. The transporter encoded by the human and mouse SLC17A9 gene, a novel member of an anion transporter family, was predominantly expressed in the brain and adrenal gland. The mouse and bovine counterparts were associated with adrenal chromaffin granules. Proteoliposomes containing purified transporter actively took up ATP, ADP, and GTP by using membrane potential as the driving force. The uptake properties of the reconstituted transporter were similar to that of the ATP uptake by synaptic vesicles and chromaffin granules. Suppression of endogenous SLC17A9 expression in PC12 cells decreased exocytosis of ATP. These findings strongly suggest that SLC17A9 protein is a vesicular nucleotide transporter and should lead to the elucidation of the molecular mechanism of ATP secretion in purinergic signal transmission.