Centro Interuniversitário de História das Ciências e da Tecnologia

Engel, Michael S, Ceríaco, Luis M P, Daniel, Gimo M, Dellapé, Pablo M, Löbl, Ivan, Marinov, Milen, Reis, Roberto E, Young, Mark T, Dubois, Alain, Agarwal, Ishan, Lehmann A., Pablo, Alvarado, Mabel, Alvarez, Nadir, Andreone, Franco, Araujo-Vieira, Katyuscia, Ascher, John S, Baêta, Délio, Baldo, Diego, Bandeira, Suzana A, Barden, Phillip, Barrasso, Diego A, Bendifallah, Leila, Bockmann, Flávio A, Böhme, Wolfgang, Borkent, Art, Brandão, Carlos R F, Busack, Stephen D, Bybee, Seth M, Channing, Alan, Chatzimanolis, Stylianos, Christenhusz, Maarten J M, Crisci, Jorge V, D'elía, Guillermo, Da Costa, Luis M, Davis, Steven R, De Lucena, Carlos Alberto S, Deuve, Thierry, Fernandes Elizalde, Sara, Faivovich, Julián, Farooq, Harith, Ferguson, Adam W, Gippoliti, Spartaco, Gonçalves, Francisco M P, Gonzalez, Victor H, Greenbaum, Eli, Hinojosa-Díaz, Ismael A, Ineich, Ivan, Jiang, Jianping, Kahono, Sih, Kury, Adriano B, Lucinda, Paulo H F, Lynch, John D, Malécot, Valéry, Marques, Mariana P, Marris, John W M, Mckellar, Ryan C, Mendes, Luis F, Nihei, Silvio S, Nishikawa, Kanto, Ohler, Annemarie, Orrico, Victor G D, Ota, Hidetoshi, Paiva, Jorge, Parrinha, Diogo, Pauwels, Olivier S G, Pereyra, Martín O, Pestana, Lueji B, Pinheiro, Paulo D P, Prendini, Lorenzo, Prokop, Jakub, Rasmussen, Claus, Rödel, Mark-Oliver, Rodrigues, Miguel Trefaut, Rodríguez, Sara M, Salatnaya, Hearty, Sampaio, Íris, Sánchez-García, Alba, Shebl, Mohamed A, Santos, Bruna S, Solórzano-Kraemer, Mónica M, Sousa, Ana C A, Stoev, Pavel, Teta, Pablo, Trape, Jean-François, Dos Santos, Carmen Van-Dúnem, Vasudevan, Karthikeyan, Vink, Cor J, Vogel, Gernot, Wagner, Philipp, Wappler, Torsten, Ware, Jessica L, Wedmann, Sonja, Zacharie, Chifundera Kusamba (2021): EDITORIAL The taxonomic impediment: a shortage of taxonomists, not the lack of technical approaches. Zoological Journal of the Linnean Society 193 (2): 381-387, DOI: 10.1093/zoolinnean/zlab072, URL: https://academic.oup.com/zoolinnean/article/193/2/381/6374389

The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.

Americanae nace como un proyecto conjunto que surge dentro de la Red Europea de Información y Documentación sobre América Latina (REDIAL), y que ha afrontado la Biblioteca de la Agencia Española de Cooperación Internacional para el Desarrollo (AECID). Esta nueva biblioteca virtual hace más accesibles los libros digitales de tema americanista a los investigadores y usuarios interesados de cualquier parte del mundo.

Amyotrophic lateral sclerosis is characterized by a progressive degeneration of the corticospinal tract motor neurons. Growing evidence suggests that degeneration may begin at the distal axon proceeding in a dying-back pattern. It seemed therefore of interest to investigate synaptic transmission at the neuromuscular junction (NMJ) in pre- and symptomatic phases of the disease. Endplate potentials (EPPs), miniatures endplate potentials (MEPPs) and giant MEPPs (GMEPPs) were recorded from innervated diaphragm muscle fibers from 4-6 and 12-15 weeks-old SOD1(G93A) mice and non-transgenic aged-matched littermates (WT). In the pre-symptomatic phase, SOD1(G93A) mice exhibited a significant increase in the mean amplitude of EPPs together with an increase in the mean quantal content of EPPs, suggesting that more acetylcholine is being released into the synaptic cleft. SOD1(G93A) mice presented a higher frequency of GMEPPs, suggestive of intracellular Ca(2+) deregulation in nerve terminals. The increase in the mean amplitude of MEPPs and the decreased mean rise-time of MEPPs in SOD1(G93A) mice point to post-synaptic related changes. In the symptomatic phase, electrophysiological data showed evidence for two NMJ groups in SOD1(G93A) mice: SOD1a and SOD1b. SOD1a group presented reduced mean amplitude of both EPPs and MEPPs. The mean rise-time of MEPPs was increased, when compared to WT and to SOD1b group, indicating impairments in the neuromuscular transmission. In contrast, the neuromuscular transmission of SOD1b group was not different from age-matched WT nor pre-symptomatic SOD1(G93A) mice, being somehow in between both groups. Altogether these results show that the neuromuscular transmission of SOD1(G93A) mice is enhanced in the pre-symptomatic phase. In the symptomatic phase our results are consistent with the hypothesis that the diaphragm of SOD1(G93A) mice is undergoing cycles of denervation/re-innervation supported by mixed neuromuscular junction populations. These early changes in the neuromuscular transmission of SOD1(G93A) mice suggest that the ALS associated events start long before symptoms onset.

Neste artigo, reflete-se sobre os sentidos que o conceito de “cena” adquire em abordagens teóricas que empreendem uma cartografia das sociabilidades emergentes no espaço urbano das cidades. Tentativas de refinar o conceito de “cena”, durante a década de 1990, esbarraram em seu caráter escorregadio e anti-essencialista, que parece expandir-se ou contrairse para dar conta de fenômenos relativos às comunidades culturais urbanas do século XX. Adverte-se para o risco de uma celebração exacerbada da efervescência cultural, atribuída às cenas por aquelas abordagens, e discutese a possibilidade de o conceito isolar qualquer agenciamento político relativo a fenômenos culturais urbanos.

BACKGROUND: The increasing availability of reference libraries of DNA barcodes (RLDB) offers the opportunity to the screen the level of consistency in DNA barcode data among libraries, in order to detect possible disagreements generated from taxonomic uncertainty or operational shortcomings. We propose a ranking system to attribute a confidence level to species identifications associated with DNA barcode records from a RLDB. Here we apply the proposed ranking system to a newly generated RLDB for marine fish of Portugal. METHODOLOGY/PRINCIPAL FINDINGS: Specimens (n = 659) representing 102 marine fish species were collected along the continental shelf of Portugal, morphologically identified and archived in a museum collection. Samples were sequenced at the barcode region of the cytochrome oxidase subunit I gene (COI-5P). Resultant DNA barcodes had average intra-specific and inter-specific Kimura-2-parameter distances (0.32% and 8.84%, respectively) within the range usually observed for marine fishes. All specimens were ranked in five different levels (A-E), according to the reliability of the match between their species identification and the respective diagnostic DNA barcodes. Grades A to E were attributed upon submission of individual specimen sequences to BOLD-IDS and inspection of the clustering pattern in the NJ tree generated. Overall, our study resulted in 73.5% of unambiguous species IDs (grade A), 7.8% taxonomically congruent barcode clusters within our dataset, but awaiting external confirmation (grade B), and 18.7% of species identifications with lower levels of reliability (grades C/E). CONCLUSION/SIGNIFICANCE: We highlight the importance of implementing a system to rank barcode records in RLDB, in order to flag taxa in need of taxonomic revision, or reduce ambiguities of discordant data. With increasing DNA barcode records publicly available, this cross-validation system would provide a metric of relative accuracy of barcodes, while enabling the continuous revision and annotation required in taxonomic work.

Carry-over effects relate to events or processes that influence individual performance in a subsequent season, but their occurrence in the annual cycle of migratory avian taxa is seldom studied. We investigated if different levels of resource allocation to reproduction may result in carry-over effects that change the timing and destination of long-distance migration. We reduced the parental investment of Cory's Shearwaters Calonectris diomedea by removing their chick at an early stage. When compared to individuals with greater parental investment (controls that raised chicks to close to fledging), manipulated birds started most stages of migration sooner and returned to the colony earlier at the start of the following breeding season. Late arrival in the subsequent nesting season increased the probability of skipping a breeding year. Manipulated males were less likely to engage in long-distance migration, which supports the idea that partial migration is condition dependent. Our study demonstrates experimentally that energetic or time-dependent costs of reproduction may have an enduring impact on migration schedule and on nonbreeding geographical distribution of long-distance migrants, which may also influence the ability to breed in the following season.

As the mosses, the liverwort flora of Uruguay is poorly known with large areas without studies and exploration (Ellis et al., 2012, 2011). According to Hässel de Menendez & Rubies (2009) only 30 species of Marchantiophyta are recorded from Uruguay, and the genus Metzgeria is not represent in this country. During the examination of a recent collection of bryophyte from Uruguay, M. myriopoda was identified. This is an American species, reported in South America from Equator, Peru, Brazil, Bolivia, Argentina and Paraguay (Kuwahara, 1986; Nieva & Schiavone, 2002; Costa, 2008). In Uruguay, M. myriopoda occurs in Cerro Largo, a temperate and warm grassland area exhibiting some forested zones where exotics and few native tree species are found, characterized by precipitations rates around 1100-1200 mm/year. Taking into account the climatic characteristic of the area in which M. myriopoda was collected in Cerro Largo, and previous records, there is an extensive degree of environmental conditions under which M. myriopoda can grow, including several substrates (cortex, rocks, soil and as epiphytic), temperature ranges and altered environments. The examination of M. Myriopoda revealed that the characters are highly constant, presenting 2-8 epidermal dorsal cells and 4-6 epidermal ventral ones of the midrib; the convex wings with straight short geminate hairs, and abundant marginal gemma. This note constitutes the first record for Metzgeria genus from Uruguayan lands, extending the distributional range of M. myriopoda to Cerro Largo in Uruguay.

The 3 lamprey species, sea lamprey Petromyzon marinus L., European river lamprey Lampetra fluviatilis L. and European brook lamprey L. planeri Bloch, that inhabit the Iberian Peninsula are of conservation concern. They are considered either Vulnerable, Critically Endangered, and even Extinct in different regions of this area mainly due to habitat loss and population fragmentation. Although several other factors contribute to the decline of lamprey populations in Iberian rivers, obstacles to migration (dams and weirs) are probably the most widespread and significant, causing an estimated 80% loss of accessible habitat in most river basins. We analysed historical records from all main Iberian rivers before the construction of impassable dams became widespread, and found that lampreys were consistently present in the upper reaches. The unblocking of the lower stretches of major river basins and the restoration of former spawning sites and larval habitats should be considered as priority measures for the conservation of these species. Identification of Special Areas of Conservation to be included in the Natura 2000 European network can also be very relevant for lamprey conservation.

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a-b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016.

Risk assessments are crucial for identifying and mitigating impacts from biological invasions. The Fish Invasiveness Scoring Kit (FISK) is a risk identification (screening) tool for freshwater fishes consisting of two subject areas: biogeography/history and biology/ecology. According to the outcomes, species can be classified under particular risk categories. The aim of this study was to apply FISK to the Iberian Peninsula, a Mediterranean climate region highly important for freshwater fish conservation due to a high level of endemism. In total, 89 fish species were assessed by three independent assessors. Results from receiver operating characteristic analysis showed that FISK can discriminate reliably between noninvasive and invasive fishes for Iberia, with a threshold of 20.25, similar to those obtained in several regions around the world. Based on mean scores, no species was categorized as "low risk," 50 species as "medium risk," 17 as "moderately high risk," 11 as "high risk," and 11 as "very high risk." The highest scoring species was goldfish Carassius auratus. Mean certainty in response was above the category "mostly certain," ranging from tinfoil barb Barbonymus schwanenfeldii with the lowest certainty to eastern mosquitofish Gambusia holbrooki with the highest level. Pair-wise comparison showed significant differences between one assessor and the other two on mean certainty, with these two assessors showing a high coincidence rate for the species categorization. Overall, the results suggest that FISK is a useful and viable tool for assessing risks posed by non-native fish in the Iberian Peninsula and contributes to a "watch list" in this region.

OBJECTIVE: The aim of this study was to test the association between linear enamel hypolasias and adult socioeconomic circumstances with age at death in a modern skeletal sample of known age. Specifically, this study wishes to test whether there is a relationship between early life stressors, environmental quality in adult life and premature mortality. METHODS: The presence/absence of LEH and the number of LEH episodes were recorded in 113 adult males from the Lisbon identified skeletal collection. The association between LEH and age was quantified using linear regression and binary logistic regression models, calculating crude and adjusted linear regression coefficients and odds ratios. The models were adjusted for year of birth, socioeconomic and migration status, and cause of death. RESULTS: The presence and number of LEH were related to premature mortality. Individuals expressing at least one enamel defect survived 9.0 years less or were 2.5 times more likely to die before 53 years of age compared to individuals with no LEH. However, when controlling for the confounding factors considered, the association between LEH and age became nonsignificant. CONCLUSIONS: The results indicate that although early life stressors, identified as LEH, seem strongly associated with premature mortality, adulthood socioeconomic circumstances accounts for most of the decreased longevity. This suggests that either macroscopically identified LEH in the permanent canine do not measure stressors early in life, or that a cumulative adversity model is a more adequate explanation.

This study further tests the general assumption that skeletal development is more sensitive to socioeconomic factors than dental development in a sample of modern immature Portuguese skeletons (N = 41) of known sex, age, and socioeconomic background. Skeletal development was assessed from skeletal maturation of the knee and dental development was assessed from schedules of tooth formation. Discrepancies between physiological age (skeletal and dental age) and chronological age were used as a measure of developmental status. A positive score indicates that physiological age is in advance of chronological age, whereas a negative score indicates the reverse. Two socioeconomic groups, one of low and the other of high socioeconomic status, were created based on the occupation of the father and on the place of residence, and developmental status was compared between the two socioeconomic groups. Results confirm previous studies by showing that dental development is less affected by environmental insults than skeletal maturation. While socioeconomic differences in skeletal maturation range from 1.20 to 1.22 years (15-18% of chronological age), socioeconomic differences in dental maturation range from 0.51 to 0.53 years (4-9% of chronological age). Compared to a previous study, results also suggest that skeletal maturation is more affected than skeletal growth. Additionally, an adaptation of the radiographic atlas of skeletal development of the knee is proposed for use with dry skeletal material.

Oceanic islands are of fundamental importance for the conservation of biodiversity because they exhibit high endemism rates coupled with fast extinction rates. Nowhere in Europe is this pattern more conspicuous than in the Macaronesian biogeographic region. A large network of protected areas within the region has been developed, but the question of whether these areas will still be climatically suitable for the globally threatened endemic element in the coming decades remains open. Here, we make predictions on the fate of the Macaronesian endemic bryophyte flora in the context of ongoing climate change. The potential distribution of 35 Macaronesian endemic bryophyte species was assessed under present and future climate conditions using an ensemble modelling approach. Projections of the models under different climate change scenarios predicted an average decrease of suitable areas of 62-87% per species and a significant elevational increase by 2070, so that even the commonest species were predicted to fit either the Vulnerable or Endangered IUCN categories. Complete extinctions were foreseen for six of the studied Macaronesian endemic species. Given the uncertainty regarding the capacity of endemic species to track areas of suitable climate within and outside the islands, active management associated to an effective monitoring program is suggested.

Knowledge of the dietary choices and trophic niches of organisms is the key to understanding their roles in ecosystems. In seabird diet studies, prey identification is a difficult challenge, often yielding results with technique-specific biases. Additionally, sampling efforts are often not extensive enough to reveal intrapopulational variation. Immature animals, which may constitute up to 50% of a population, may occupy a significantly different trophic niche to more experienced birds, but this remains largely unexplored. We investigated the diet of Cory's shearwater (Calonectris diomedea) from Selvagem Grande, an island located off the northwest African coast, collecting a total of 698 regurgitate samples over three consecutive breeding seasons. The diet was assessed using two complementary approaches for prey identification: conventional morphological analysis (using fish vertebrae, otoliths and cephalopod beaks) and DNA barcoding of the 16S rRNA mitochondrial gene, in cases where a positive identification could not be retrieved. Species assignments employed BLAST and distance-based methods, as well as direct optimization of the tree length based on unaligned sequences in POY. This method resulted in robust tree estimates and species assignments, showing its potential for DNA barcoding of stomach contents using hypervariable markers such as the 16S. The molecular approach increased taxonomic resolution and revealed an additional 17 taxa. Diet differed significantly according to breeding status, sex, breeding phase (prelaying and chick rearing) and year. Such direct evidence of trophic segregation within the same population has rarely been shown in seabirds and highlights the importance of including such variables in ecosystem-based management approaches.

Ammonia and ammonium have received less attention than other forms of air pollution, with limited progress in controlling emissions at UK, European and global scales. By contrast, these compounds have been of significant past interest to science and society, the recollection of which can inform future strategies. Sal ammoniac ( nūshādir , nao sha ) is found to have been extremely valuable in long-distance trade ( ca AD 600–1150) from Egypt and China, where 6–8 kg N could purchase a human life, while air pollution associated with nūshādir collection was attributed to this nitrogen form. Ammonia was one of the keys to alchemy—seen as an early experimental mesocosm to understand the world—and later became of interest as ‘alkaline air’ within the eighteenth century development of pneumatic chemistry. The same economic, chemical and environmental properties are found to make ammonia and ammonium of huge relevance today. Successful control of acidifying SO 2 and NO x emissions leaves atmospheric NH 3 in excess in many areas, contributing to particulate matter (PM 2.5 ) formation, while leading to a new significance of alkaline air, with adverse impacts on natural ecosystems. Investigations of epiphytic lichens and bog ecosystems show how the alkalinity effect of NH 3 may explain its having three to five times the adverse effect of ammonium and nitrate, respectively. It is concluded that future air pollution policy should no longer neglect ammonia. Progress is likely to be mobilized by emphasizing the lost economic value of global N emissions ($200 billion yr −1 ), as part of developing the circular economy for sustainable nitrogen management. This article is part of a discussion meeting issue ‘Air quality, past present and future’.

Fisheries have major impacts on seabirds, both by changing food availability and by causing direct mortality of birds during trawling and longline setting. However, little is known about the nature and the spatial-temporal extent of the interactions between individual birds and vessels. By studying a system in which we had fine-scale data on bird movements and activity, and near real-time information on vessel distribution, we provide new insights on the association of a threatened albatross with fisheries. During early chick-rearing, black-browed albatrosses Thalassarche melanophris from two different colonies (separated by only 75 km) showed significant differences in the degree of association with fisheries, despite being nearly equidistant to the Falklands fishing fleet. Most foraging trips from either colony did not bring tracked individuals close to vessels, and proportionally little time and foraging effort was spent near ships. Nevertheless, a few individuals repeatedly visited fishing vessels, which may indicate they specialise on fisheries-linked food sources and so are potentially more vulnerable to bycatch. The evidence suggests that this population has little reliance on fisheries discards at a critical stage of its nesting cycle, and hence measures to limit fisheries waste on the Patagonian shelf that also reduce vessel attractiveness and the risk of incidental mortality, would be of high overall conservation benefit.

Long-distance migrants have developed diverse strategies to deal with the challenges imposed by their annual journeys. These are relatively well studied in some avian groups, such as passerines, shorebirds and raptors. In contrast, few studies have addressed the migratory behaviour of pelagic birds in the light of current theories of optimal migration. Using a dataset of 100 complete migratory tracks gathered along four years, we performed a detailed study on the migratory strategy of a pelagic trans-equatorial migrant, the Cory's shearwater Calonectris diomedea. We analysed daily routines, stopover ecology and travel speed, as well as the influence of the moon on several behavioural patterns. Cory's shearwaters adopted a "fly-and-forage" strategy when migrating, similarly to what has been observed in some raptors. However, by flying by dynamic soaring, shearwaters attained high overall migration speeds, and were able to travel thousands of kilometres without making major stopovers and, apparently, without a noticeable pre-migratory fattening period. Other major findings of this study include the ability to adapt daily schedules when crossing major ecological barriers, and the constant adjustment of migration speed implying higher rates of travel in the pre-breeding movement, with a final sprint to the nesting colony. The present study also highlights a preference of Cory's shearwaters for starting travel at twilight and documents a strong relationship between their migratory activity and the moon phase.

A study of a project on science stand-up comedy developed in Portugal between 2009 and 2013 is presented, in which thirteen scientists, coordinated by a science communicator and a professional actor, created and presented comedy acts. Eleven of these scientists were asked about their motivations to participate, the process of performance development and the perceived value of the project. Personal motivations were highly important, but professional reasons were also mentioned. Working in a group with the guidance of coordinators, testing and re-writing the texts and gradually gaining confidence on stage were considered fundamental in the development of the shows. Additionally, a questionnaire revealed that the audience, most of whom were young adults, and held a higher education degree, were satisfied with the show. Overall, both participating scientists and audience members considered that stand-up comedy has potential for science communication.

Summary Food webs and trophic dynamics of coastal systems have been the focus of intense research throughout the world, as they prove to be critical in understanding ecosystem processes and functions. However, very few studies have undertaken a quantitative comparison of entire food webs from a key consumer perspective across a broad geographical area, limiting relevant comparisons among systems with distinct biotic and abiotic components. We investigate the structure and functioning of food webs in four tidal ecosystems of international importance for migratory shorebirds along the East Atlantic Flyway: Tejo estuary in Portugal, Sidi Moussa in Morocco, Banc d'Arguin in Mauritania and Bijagós archipelago in Guinea‐Bissau. Basal food sources, shorebirds and their prey (benthic invertebrates) were sampled in all areas, and Bayesian stable isotope mixing models and community‐wide metrics were used in a comparative analysis among areas. Significant differences among study areas were found in the structure of food webs, as well as in the relative importance of basal resource pools supporting each food web. Overall, the food web of Banc d'Arguin was characterized by lower trophic diversity and higher functional redundancy than the other sites. This result might be explained by the low number of trophic pathways of organic matter transfer in this seagrass‐dominated system which, as a fossil estuary, lacks inputs from both freshwater and nutrient‐rich offshore oceanic waters. Structure of shorebird communities was consistent with the main organizational patterns found for each food web, highlighting the less diverse character of the community of Banc d'Arguin. At Banc d'Arguin and Bijagós archipelago, which displayed the smallest and largest isotopic niche widths in bird assemblage, respectively, mean niche overlap among species was low, suggesting high interspecific partitioning in resource use. Tropical systems typically offer comparatively lower harvestable prey biomass for shorebirds and might thus strengthen interspecific competition, leading to low niche overlap among species. Our study reveals relevant differences in the structure of food webs and shorebird communities in coastal areas along an avian flyway. While differences in trophic redundancy of food webs point to distinct levels of ecosystem resilience, contrasts in the organization of shorebird communities highlight the plasticity in the foraging behaviour of species inhabiting areas with distinct environmental conditions.