NobleBlocks

Department of Agriculture and Food Western Australia

governmentSouth Perth, Western Australia, Australia

Research output, citation impact, and the most-cited recent papers from Department of Agriculture and Food Western Australia (Australia). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
975
Citations
50.1K
h-index
94
i10-index
1.1K
Also known as
Department of Agriculture and Food Western Australia

Top-cited papers from Department of Agriculture and Food Western Australia

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae
Tofazzal Islam, Daniel Croll, Pierre Gladieux, Darren M. Soanes +4 more
2016· BMC Biology477doi:10.1186/s12915-016-0309-7

BACKGROUND: In February 2016, a new fungal disease was spotted in wheat fields across eight districts in Bangladesh. The epidemic spread to an estimated 15,000 hectares, about 16 % of the cultivated wheat area in Bangladesh, with yield losses reaching up to 100 %. Within weeks of the onset of the epidemic, we performed transcriptome sequencing of symptomatic leaf samples collected directly from Bangladeshi fields. RESULTS: Reinoculation of seedlings with strains isolated from infected wheat grains showed wheat blast symptoms on leaves of wheat but not rice. Our phylogenomic and population genomic analyses revealed that the wheat blast outbreak in Bangladesh was most likely caused by a wheat-infecting South American lineage of the blast fungus Magnaporthe oryzae. CONCLUSION: Our findings suggest that genomic surveillance can be rapidly applied to monitor plant disease outbreaks and provide valuable information regarding the identity and origin of the infectious agent.

Agricultural use of wetlands: opportunities and limitations
Jos T. A. Verhoeven, Tim L. Setter
2009· Annals of Botany398doi:10.1093/aob/mcp172

BACKGROUND: Wetlands are species-rich habitats performing valuable ecosystem services such as flood protection, water quality enhancement, food chain support and carbon sequestration. Worldwide, wetlands have been drained to convert them into agricultural land or industrial and urban areas. A realistic estimate is that 50 % of the world's wetlands have been lost. SCOPE: This paper reviews the relationship between wetlands and agriculture with the aim to identify the successes and failures of agricultural use in different types of wetlands, with reference to short-term and long-term benefits and issues of sustainability. It also addresses a number of recent developments which will lead to pressure to reclaim and destroy natural wetlands, i.e. the continuous need for higher production to feed an increasing world population and the increasing cultivation of energy crops. Finally, attention is paid to the development of more flood-tolerant crop cultivars. CONCLUSIONS: Agriculture has been carried out in several types of (former) wetlands for millennia, with crop fields on river floodplain soils and rice fields as major examples. However, intensive agricultural use of drained/reclaimed peatlands has been shown to lead to major problems because of the oxidation and subsidence of the peat soil. This does not only lead to severe carbon dioxide emissions, but also results in low-lying land which needs to be protected against flooding. Developments in South-East Asia, where vast areas of tropical peatlands are being converted into oil palm plantations, are of great concern in this respect. Although more flood-tolerant cultivars of commercial crop species are being developed, these are certainly not suitable for cultivation in wetlands with prolonged flooding periods, but rather will survive relatively short periods of waterlogging in normally improved agricultural soils. From a sustainability perspective, reclamation of peatlands for agriculture should be strongly discouraged. The opportunities for agriculture in naturally functioning floodplains should be further investigated. The development and use of crop cultivars with an even stronger flood tolerance could form part of the sustainable use of such floodplain systems. Extensive use of wetlands without drastic reclamation measures and without fertilizer and pesticides might result in combinations of food production with other wetland services, with biodiversity remaining more or less intact. There is a need for research by agronomists and environmental scientists to optimize such solutions.

Isolation and properties of soybean [ <i>Glycine max</i> (L.) Merr.] mutants that nodulate in the presence of high nitrate concentrations
Bernard J. Carroll, D. L. McNeil, Peter M. Gresshoff
1985· Proceedings of the National Academy of Sciences371doi:10.1073/pnas.82.12.4162

Soybean seeds [Glycine max (L.) Merr. ev. Bragg] were mutagenized with ethyl methanesulfonate. The M(2) progeny (i.e., the first generation after mutagenesis) of these seeds were screened for increased nodulation under high nitrate culture conditions. Fifteen independent nitrate-tolerant symbiotic (nts) mutants were obtained from 2500 M(2) families. In culture on sand with KNO(3), nodule mass and nodule number in mutant lines were several-fold those of the wild type cultured under the same conditions. Inheritance of the nts character through to subsequent generations was observed in the 10 mutants tested. Mutant nts382 also nodulated more than the wild type in the absence of nitrate. Furthermore, nitrate stimulated growth in both the wild type and nts382, and these lines had similar nitrate reductase activity. These results indicate that nts382 is affected in a nodule-development regulatory gene and not in a gene related to nitrate assimilation.

Level of nutrition affects leptin concentrations in plasma and cerebrospinal fluid in sheep
Dominique Blache, Ross L. Tellam, L.M. Chagas, MA Blackberry +2 more
2000· Journal of Endocrinology329doi:10.1677/joe.0.1650625

In mature male sheep, the level of nutrition acutely influences the secretion of reproductive hormones. The mechanism involved is not fully understood but findings in humans and laboratory rodents would suggest a major role for leptin that is secreted from adipose tissue and then travels via the circulation to the central nervous system. Before we can begin to test this hypothesis, we need to be able to measure leptin concentrations in blood plasma and cerebrospinal fluid. We have therefore developed a radioimmunoassay using antibodies raised against biologically active recombinant bovine-ovine leptin. Using this assay, we found that plasma concentrations of leptin were highly correlated to back-fat thickness and to the ratio of back-fat thickness to liveweight, in female and castrated male sheep. Plasma concentrations of leptin were higher in female sheep than in castrated or intact male sheep. Serial samples (every 5 min) suggested that the secretion of leptin in male sheep is episodic but it does not appear to show clear pulsatility, increases post-prandially, or a diurnal rhythm. Leptin concentrations in both plasma and cerebrospinal fluid increased within 5 days in male sheep fed a diet with a high content of energy and protein that also stimulates the secretion of LH pulses. These data suggest that in sheep, as in other species, leptin production is correlated with the mass of adipose tissue and that the hormone passes from the circulation to the cerebrospinal fluid and then to hypothalamic sites. There, it may affect appetite and perhaps GnRH secretion. The role of leptin in the link between nutrition and reproduction needs further investigation.

Redox Regulation of Plant Development
Michael Considine, Christine H. Foyer
2013· Antioxidants and Redox Signaling288doi:10.1089/ars.2013.5665

SIGNIFICANCE: We provide a conceptual framework for the interactions between the cellular redox signaling hub and the phytohormone signaling network that controls plant growth and development to maximize plant productivity under stress-free situations, while limiting growth and altering development on exposure to stress. RECENT ADVANCES: Enhanced cellular oxidation plays a key role in the regulation of plant growth and stress responses. Oxidative signals or cycles of oxidation and reduction are crucial for the alleviation of dormancy and quiescence, activating the cell cycle and triggering genetic and epigenetic control that underpin growth and differentiation responses to changing environmental conditions. CRITICAL ISSUES: The redox signaling hub interfaces directly with the phytohormone network in the synergistic control of growth and its modulation in response to environmental stress, but a few components have been identified. Accumulating evidence points to a complex interplay of phytohormone and redox controls that operate at multiple levels. For simplicity, we focus here on redox-dependent processes that control root growth and development and bud burst. FUTURE DIRECTIONS: The multiple roles of reactive oxygen species in the control of plant growth and development have been identified, but increasing emphasis should now be placed on the functions of redox-regulated proteins, along with the central roles of reductants such as NAD(P)H, thioredoxins, glutathione, glutaredoxins, peroxiredoxins, ascorbate, and reduced ferredoxin in the regulation of the genetic and epigenetic factors that modulate the growth and vigor of crop plants, particularly within an agricultural context.

Direct and residual effect of biochar application on mycorrhizal root colonisation, growth and nutrition of wheat
Zakaria M. Solaiman, Paul Blackwell, Lynette K. Abbott, Paul Storer
2010· Soil Research248doi:10.1071/sr10002

The influence of biochar (biomass-derived black carbon) on crop growth and nutrient uptake varies based on the rate of biochar applied with fertilisers. We investigated the effect of deep-banded oil mallee biochar at different rates (0, 1.5, 3.0, and 6 t/ha) with 2 types of fertiliser (non-inoculated MultiMAPS® at 30 or 55 kg/ha; inoculated Western Mineral Fertiliser at 100 kg/ha) on wheat growth at a farmer’s field in a low rainfall area of Western Australia. Wheat yield increased significantly when biochar was applied with inoculated fertiliser and 30 kg/ha non-inoculated fertiliser. Mycorrhizal colonisation in wheat roots increased significantly with biochar application with inoculated mineral fertiliser. Mycorrhizal hyphae may have improved water supply to reduce drought stress in these treatments by extending crop exploration of water from the wide inter-rows. Grain yield increases were due to better grain survival and grain fill with reduced drought stress. Early stage phosphorus uptake was not improved by mycorrhizal colonisation—phosphorus supply from the soil and applied fertiliser was already adequate. The residual effect of biochar and mineral fertilisers was assessed using a mycorrhizal bioassay for soil collected from the field trial 2 years after application of biochar. Biochar and both fertilisers increased mycorrhizal colonisation in clover bioassay plants. Deep-banded biochar provided suitable conditions for mycorrhizal fungi to colonise plant roots.

Effect of banded biochar on dryland wheat production and fertiliser use in south-western Australia: an agronomic and economic perspective
Paul Blackwell, Evelyn S. Krull, Greg Butler, Allan Herbert +1 more
2010· Soil Research241doi:10.1071/sr10014

Effects of banded biochar application on dryland wheat production and fertiliser use in 4 experiments in Western Australia and South Australia suggest that biochar has the potential to reduce fertiliser requirement while crop productivity is maintained, and biochar additions can increase crop yields at lower rates of fertiliser use. Banding was used to minimise wind erosion risk and place biochar close to crop roots. The biochars/metallurgical chars used in this study were made at relatively high temperatures from woody materials, forming stable, low-nutrient chars. The results suggest that a low biochar application rate (~1 t/ha) by banding may provide significant positive effects on yield and fertiliser requirement. Benefits are likely to result from improved crop nutrient and water uptake and crop water supply from increased arbuscular mycorrhizal fungal colonisation during dry seasons and in low P soils, rather than through direct nutrient or water supply from biochars. Financial analysis using farm cash flow over 12 years suggests that a break-even total cost of initial biochar use can range from AU$40 to 190/ha if the benefits decline linearly to nil over 12 years, taking into account a P fertiliser saving of 50% or a yield increase of 10%, or both, assuming long-term soil fertility is not compromised. Accreditation of biochar for carbon trading may assist cost reduction.

Climate change impacts on northern Australian rangeland livestock carrying capacity: a review of issues
G. M. McKeon, Grant Stone, Jozef Syktus, J. O. Carter +4 more
2009· The Rangeland Journal240doi:10.1071/rj08068

Grazing is a major land use in Australia’s rangelands. The ‘safe’ livestock carrying capacity (LCC) required to maintain resource condition is strongly dependent on climate. We reviewed: the approaches for quantifying LCC; current trends in climate and their effect on components of the grazing system; implications of the ‘best estimates’ of climate change projections for LCC; the agreement and disagreement between the current trends and projections; and the adequacy of current models of forage production in simulating the impact of climate change. We report the results of a sensitivity study of climate change impacts on forage production across the rangelands, and we discuss the more general issues facing grazing enterprises associated with climate change, such as ‘known uncertainties’ and adaptation responses (e.g. use of climate risk assessment). We found that the method of quantifying LCC from a combination of estimates (simulations) of long-term (&amp;gt;30 years) forage production and successful grazier experience has been well tested across northern Australian rangelands with different climatic regions. This methodology provides a sound base for the assessment of climate change impacts, even though there are many identified gaps in knowledge. The evaluation of current trends indicated substantial differences in the trends of annual rainfall (and simulated forage production) across Australian rangelands with general increases in most of western Australian rangelands (including northern regions of the Northern Territory) and decreases in eastern Australian rangelands and south-western Western Australia. Some of the projected changes in rainfall and temperature appear small compared with year-to-year variability. Nevertheless, the impacts on rangeland production systems are expected to be important in terms of required managerial and enterprise adaptations. Some important aspects of climate systems science remain unresolved, and we suggest that a risk-averse approach to rangeland management, based on the ‘best estimate’ projections, in combination with appropriate responses to short-term (1–5 years) climate variability, would reduce the risk of resource degradation. Climate change projections – including changes in rainfall, temperature, carbon dioxide and other climatic variables – if realised, are likely to affect forage and animal production, and ecosystem functioning. The major known uncertainties in quantifying climate change impacts are: (i) carbon dioxide effects on forage production, quality, nutrient cycling and competition between life forms (e.g. grass, shrubs and trees); and (ii) the future role of woody plants including effects of fire, climatic extremes and management for carbon storage. In a simple example of simulating climate change impacts on forage production, we found that increased temperature (3°C) was likely to result in a decrease in forage production for most rangeland locations (e.g. –21% calculated as an unweighted average across 90 locations). The increase in temperature exacerbated or reduced the effects of a 10% decrease/increase in rainfall respectively (–33% or –9%). Estimates of the beneficial effects of increased CO2 (from 350 to 650 ppm) on forage production and water use efficiency indicated enhanced forage production (+26%). The increase was approximately equivalent to the decline in forage production associated with a 3°C temperature increase. The large magnitude of these opposing effects emphasised the importance of the uncertainties in quantifying the impacts of these components of climate change. We anticipate decreases in LCC given that the ‘best estimate’ of climate change across the rangelands is for a decline (or little change) in rainfall and an increase in temperature. As a consequence, we suggest that public policy have regard for: the implications for livestock enterprises, regional communities, potential resource damage, animal welfare and human distress. However, the capability to quantify these warnings is yet to be developed and this important task remains as a challenge for rangeland and climate systems science.

Genetic improvement and agronomy for enhanced wheat competitiveness with weeds
D. Lemerle, Gurjeet Gill, Clare Murphy, S. Walker +4 more
2001· Australian Journal of Agricultural Research232doi:10.1071/ar00056

The rapid development of herbicide resistance in weeds, and environmental imperatives, have forced the consideration of non-chemical tactics such as crop competition for weed management. This review of wheat–weed competition examines the plant traits associated with wheat competitiveness, and the opportunities for plant breeding or manipulating crop agronomy to differentially favour the growth of the crop. Many studies have proven that enhancing crop competitive ability can reduce weed seed production and crop yield loss, although a number of difficulties in conducting this research are identified and suggestions are made for improvement. It remains to be seen whether crop competitiveness will be considered as a priority by farmers and plant breeders. Farmers require precise information on the reliability of agronomic factors such as increased crop seeding rate or choice of variety for enhancing crop competitive ability in different environments. Plant breeders need to know which plant traits to incorporate in varieties to increase competitive ability. A thorough analysis of the benefits and costs of enhancing wheat competitiveness is needed. Competitive wheat crops should be available as part of reliable and economical integrated weed management packages for farmers.

Cattle temperament: Persistence of assessments and associations with productivity, efficiency, carcass and meat quality traits1
L. M. Cafe, D. L. Robinson, D. M. Ferguson, B. L. McIntyre +2 more
2010· Journal of Animal Science218doi:10.2527/jas.2010-3304

Relationships between temperament and a range of performance, carcass, and meat quality traits in young cattle were studied in 2 experiments conducted in New South Wales (NSW) and Western Australia (WA), Australia. In both experiments, growth rates of cattle were assessed during backgrounding on pasture and grain finishing in a feedlot. Carcass and objective meat quality characteristics were measured after slaughter. Feed intake and efficiency during grain finishing were also determined in NSW. Brahman (n = 82 steers and 82 heifers) and Angus (n = 25 steers and 24 heifers) cattle were used in the NSW experiment. In NSW, temperament was assessed by measuring flight speed [FS, m/s on exit from the chute (crush)] on 14 occasions, and by assessing agitation score during confinement in the crush (CS; 1 = calm to 5 = highly agitated) on 17 occasions over the course of the experiment. Brahman (n = 173) and Angus (n = 20) steers were used in the WA experiment. In WA, temperament was assessed by measuring FS on 2 occasions during backgrounding and on 2 occasions during grain feeding. At both sites, a hormonal growth promotant (Revalor-H, Virbac, Milperra, New South Wales, Australia) was applied to one-half of the cattle at feedlot entry, and the Brahman cattle were polymorphic for 2 calpain-system markers for beef tenderness. Temperament was not related (most P > 0.05) to tenderness gene marker status in Brahman cattle and was not (all P > 0.26) modified by the growth promotant treatment in either breed. The Brahman cattle had greater individual variation in, and greater correlations within and between, repeated assessments of FS and CS than did the Angus cattle. Correlations for repeated measures of FS were greater than for repeated assessments of CS, and the strength of correlations for both declined over time. Average FS or CS for each experiment and location (NSW or WA × backgrounding or finishing) were more highly correlated than individual measurements, indicating that the average values were a more reliable assessment of cattle temperament than any single measure. In Brahman cattle, increased average FS and CS were associated with significant (P < 0.05) reductions in backgrounding and feedlot growth rates, feed intake and time spent eating, carcass weight, and objective measures of meat quality. In Angus cattle, the associations between temperament and growth rates, feed intake, and carcass traits were weaker than in Brahmans, although the strength of relationships with meat quality were similar.

Review of wheat improvement for waterlogging tolerance in Australia and India: the importance of anaerobiosis and element toxicities associated with different soils
T.L. Setter, I. Waters, Sanjay Sharma, K. N. Singh +4 more
2008· Annals of Botany212doi:10.1093/aob/mcn137

BACKGROUND AND AIMS: The lack of knowledge about key traits in field environments is a major constraint to germplasm improvement and crop management because waterlogging-prone environments are highly diverse and complex, and the mechanisms of tolerance to waterlogging include a large range of traits. A model is proposed that waterlogging tolerance is a product of tolerance to anaerobiosis and high microelement concentrations. This is further evaluated with the aim of prioritizing traits required for waterlogging tolerance of wheat in the field. METHODS: Waterlogging tolerance mechanisms of wheat are evaluated in a range of diverse environments through a review of past research in Australia and India; this includes selected soils and plant data, including plant growth under waterlogged and drained conditions in different environments. Measurements focus on changes in redox potential and concentrations of diverse elements in soils and plants during waterlogging. KEY RESULTS: (a) Waterlogging tolerance of wheat in one location often does not relate to another, and (b) element toxicities are often a major constraint in waterlogged environments. Important element toxicities in different soils during waterlogging include Mn, Fe, Na, Al and B. This is the first time that Al and B toxicities have been indicated for wheat in waterlogged soils in India. These results support and extend the well-known interactions of salinity/Na and waterlogging/hypoxia tolerance. CONCLUSIONS: Diverse element toxicities (or deficiencies) that are exacerbated during waterlogging are proposed as a major reason why waterlogging tolerance at one site is often not replicated at another. Recommendations for germplasm improvement for waterlogging tolerance include use of inductively coupled plasma analyses of soils and plants.

Testing the generality of above‐ground biomass allometry across plant functional types at the continent scale
Keryn I. Paul, Stephen H. Roxburgh, Jérôme Chave, Jacqueline R. England +4 more
2015· Global Change Biology206doi:10.1111/gcb.13201

Accurate ground-based estimation of the carbon stored in terrestrial ecosystems is critical to quantifying the global carbon budget. Allometric models provide cost-effective methods for biomass prediction. But do such models vary with ecoregion or plant functional type? We compiled 15 054 measurements of individual tree or shrub biomass from across Australia to examine the generality of allometric models for above-ground biomass prediction. This provided a robust case study because Australia includes ecoregions ranging from arid shrublands to tropical rainforests, and has a rich history of biomass research, particularly in planted forests. Regardless of ecoregion, for five broad categories of plant functional type (shrubs; multistemmed trees; trees of the genus Eucalyptus and closely related genera; other trees of high wood density; and other trees of low wood density), relationships between biomass and stem diameter were generic. Simple power-law models explained 84-95% of the variation in biomass, with little improvement in model performance when other plant variables (height, bole wood density), or site characteristics (climate, age, management) were included. Predictions of stand-based biomass from allometric models of varying levels of generalization (species-specific, plant functional type) were validated using whole-plot harvest data from 17 contrasting stands (range: 9-356 Mg ha(-1) ). Losses in efficiency of prediction were <1% if generalized models were used in place of species-specific models. Furthermore, application of generalized multispecies models did not introduce significant bias in biomass prediction in 92% of the 53 species tested. Further, overall efficiency of stand-level biomass prediction was 99%, with a mean absolute prediction error of only 13%. Hence, for cost-effective prediction of biomass across a wide range of stands, we recommend use of generic allometric models based on plant functional types. Development of new species-specific models is only warranted when gains in accuracy of stand-based predictions are relatively high (e.g. high-value monocultures).

Adaptation of Domestic Animals
Ralph W. Phillips
1968· Journal of Heredity193doi:10.1093/oxfordjournals.jhered.a107688

Journal Article Adaptation of Domestic Animals Get access RALPH W. PHILLIPS RALPH W. PHILLIPS United States Department of AgricultureWashington, D.C. Search for other works by this author on: Oxford Academic PubMed Google Scholar Journal of Heredity, Volume 59, Issue 3, May 1968, Page 200, https://doi.org/10.1093/oxfordjournals.jhered.a107688 Published: 01 May 1968

Antibacterial Mouthwash Blunts Oral Nitrate Reduction and Increases Blood Pressure in Treated Hypertensive Men and Women
Catherine P. Bondonno, Alex H. Liu, Kevin D. Croft, Michael Considine +3 more
2014· American Journal of Hypertension181doi:10.1093/ajh/hpu192

BACKGROUND: Endothelial nitric oxide (NO) is fundamental to cardiovascular health. Dietary nitrate and nitrate from endothelial derived NO metabolism provides a significant contribution to the circulating NO pool through the nitrate-nitrite-NO pathway. A critical step in this pathway is the reduction of nitrate to nitrite by the oral microbiota. We aimed to assess the effects of antibacterial mouthwash use on markers of nitrate-nitrite-NO metabolism and blood pressure in treated hypertensive men and women. METHODS: Fifteen treated hypertensive men and women (mean age 65 years) were recruited to a randomized controlled cross-over trial. The effects of 3-day use of antibacterial mouthwash on oral nitrate to nitrite reduction, salivary and plasma nitrate and nitrite, plasma cyclic guanosine monophosphate (cGMP) and systolic and diastolic blood pressure were compared to control (water). RESULTS: Relative to control, 3-day antibacterial mouthwash use resulted in decreased oral nitrate to nitrite reduction (P = 0.02), decreased salivary nitrite (P = 0.01) and increased salivary nitrate (P < 0.001), and there was a trend toward a decrease in plasma nitrite concentration (P = 0.09). Use of antibacterial mouthwash over 3 days also resulted in higher systolic blood pressure (2.3mm Hg; 95% CI: 0.5, 4.0; P = 0.01), but not diastolic blood pressure (P = 0.4) or plasma cGMP (P = 0.7), relative to control. CONCLUSIONS: Interruption of the nitrate-nitrite-NO pathway through the use of antibacterial mouthwash was paralleled by a small elevation of systolic blood pressure in treated hypertensive men and women.

<i>Cucumber green mottle mosaic virus</i>: Rapidly Increasing Global Distribution, Etiology, Epidemiology, and Management
Aviv Dombrovsky, Lucy T. T. Tran‐Nguyen, Roger A.C. Jones
2017· Annual Review of Phytopathology170doi:10.1146/annurev-phyto-080516-035349

Cucumber green mottle mosaic virus (CGMMV) was first described in 1935 infecting cucumber, making it one of the first plant viruses to be studied. Its initial distribution occurred out of England to other countries. This was followed by its distribution from England and these other countries to additional countries. This process increased slowly between 1935 and 1985, faster between 1986 and 2006, and rapidly between 2007 and 2016. The discovery that it diminished cucurbit fruit yields and quality, especially of watermelon, prompted a substantial research effort in worst-affected countries. These efforts included obtaining insight into its particle and genome characteristics, evolution, and epidemiology. CGMMV's particle stability, ease of contact transmission, and seed transmissibility, which are typical tobamovirus characteristics, explained its complex disease cycle and its ability to spread locally or over long distances without a vector. Knowledge of its disease etiology and epidemiology enabled development of integrated disease management approaches that rely heavily on diverse phytosanitary measures. Dispersal of seed-borne infection through the international seed trade following cucurbit seed crop production in tropical or subtropical countries explains its recent rapid dispersion worldwide.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
Sebastian Beier, Axel Himmelbach, Christian Colmsee, Xiao‐Qi Zhang +4 more
2017· Scientific Data161doi:10.1038/sdata.2017.44

Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw material for the malting industry. The map-based reference genome sequence of barley cv. 'Morex' was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing. Here, we report the experimental and computational procedures to (i) sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, (ii) find and validate overlaps between adjacent BACs, (iii) construct 4,265 non-redundant sequence scaffolds representing clusters of overlapping BACs, and (iv) order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps, an optical map and chromosome conformation capture sequencing (Hi-C). Integrative access to these sequence and mapping resources is provided by the barley genome explorer (BARLEX).

Rice Vision for Bangladesh: 2050 and Beyond
MS Kabir, MU Salam, Afroza Chowdhury, NMF Rahman +4 more
2016· Bangladesh Rice Journal157doi:10.3329/brj.v19i2.28160

CORRECTION: Due to a number of formatting and layout issues, the PDF of this paper was replaced on 10th October 2016.Combined efforts of farmers, rice scientists, extension personnel and Government of Bangladesh have yielded clean rice growth rate of 0.34 million ton (MT) year-1 during 2009-10 to 2013-14 in the country. In 2014-15, the country acquired a rice surplus of about 2 MT. However, maintaining the current surplus of rice in the coming decades is a great challenge. Authentic estimation of future rice requirement and future resource availability would guide to way forward. This paper presents rice vision for Bangladesh leading to 2050 and beyond. In this study, secondary data from different government-owned statistics and research institutes were collected, analyzed and synthesized to develop models and/or model parameters to generate outputs such as future population, rice production and rice requirement. Population of Bangladesh will reach 215.4 million in 2050, when 44.6 MT of clean rice will be required. With the pace of rice-production-increase in the last five years, production can reach 47.2 MT, having a surplus of 2.6 MT in 2050. The study sets 2.6 MT as the target for clean rice surplus every year leading to 2050 and beyond. Several hurdles, such as increasing population, decreasing resources and increasing climate vulnerability, can hinder achieving the target. Three major interventions?accelerating genetic gain, minimizing yield gap and curtailing adoption lag?are proposed to break the barriers to achieve the target. Major challenges to implement the interventions include shrinking net cropped area, decreasing availability of irrigation water and increasing pressure on soil fertility. Smart technology such as, location specific variety, profitable cropping sequences, innovative cultural management, and mechanization coupled with smart dissemination using multiple means would ease production barriers. We recommend a number of measures, such as, guaranteeing a minimum cropped area, accelerating the rate of genetic gain in varietal development and intensifying collaboration among the stakeholders to reduce adoption lag of newly released promising rice varieties, to achieve the rice vision of Bangladesh leading to 2050 and beyond.Bangladesh Rice j. 2015, 19(2): 1-18

Biochar-based fertilizer: Supercharging root membrane potential and biomass yield of rice
Jinkiat Chew, Longlong Zhu, Shaun Nielsen, Ellen R. Gräber +4 more
2020· The Science of The Total Environment157doi:10.1016/j.scitotenv.2019.136431

Biochar-based compound fertilizers (BCF) and amendments have proven to enhance crop yields and modify soil properties (pH, nutrients, organic matter, structure etc.) and are now in commercial production in China. While there is a good understanding of the changes in soil properties following biochar addition, the interactions within the rhizosphere remain largely unstudied, with benefits to yield observed beyond the changes in soil properties alone. We investigated the rhizosphere interactions following the addition of an activated wheat straw BCF at an application rates of 0.25% (g·g−1 soil), which could potentially explain the increase of plant biomass (by 67%), herbage N (by 40%) and P (by 46%) uptake in the rice plants grown in the BCF-treated soil, compared to the rice plants grown in the soil with conventional fertilizer alone. Examination of the roots revealed that micron and submicron-sized biochar were embedded in the plaque layer. BCF increased soil Eh by 85 mV and increased the potential difference between the rhizosphere soil and the root membrane by 65 mV. This increased potential difference lowered the free energy required for root nutrient accumulation, potentially explaining greater plant nutrient content and biomass. We also demonstrate an increased abundance of plant-growth promoting bacteria and fungi in the rhizosphere. We suggest that the redox properties of the biochar cause major changes in electron status of rhizosphere soils that drive the observed agronomic benefits.

Temperate pasture legumes in Australia—their history, current use, and future prospects
P. G. H. Nichols, C. K. Revell, Alan Humphries, Jake Howie +4 more
2012· Crop and Pasture Science154doi:10.1071/cp12194

Australian farmers and scientists have embraced the use of new pasture legume species more than those in any other country, with 36 annual and 11 perennial legumes having cultivars registered for use. Lucerne (Medicago sativa), white clover (Trifolium repens), and red clover (T. pratense) were introduced by the early European settlers and are still important species in Australia, but several other species, notably annual legumes, have been developed specifically for Australian environments, leading to the evolution of unique farming systems. Subterranean clover (T. subterraneum) and annual medics (Medicago spp.) have been the most successful species, while a suite of new annual legumes, including serradellas (Ornithopus compressus and O. sativus), biserrula (Biserrula pelecinus) and other Trifolium and Medicago species, has expanded the range of legume options. Strawberry clover (T. fragiferum) was the first non-traditional, perennial legume commercialised in Australia. Other new perennial legumes have recently been developed to overcome the soil acidity and waterlogging productivity constraints of lucerne and white clover and to reduce groundwater recharge and the spread of dryland salinity. These include birdsfoot trefoil (Lotus corniculatus), Talish clover (T. tumens), and hairy canary clover (Dorycnium hirsutum). Stoloniferous red clover cultivars and sulla (Hedysarum coronarium) cultivars adapted to southern Australia have also been released, along with a new cultivar of Caucasian clover (T. ambiguum) aimed at overcoming seed production issues of cultivars released in the 1970s. New species under development include the annual legume messina (Melilotus siculus) and the perennial legume narrowleaf lotus (L. tenuis) for saline, waterlogged soils, and the drought-tolerant perennial legume tedera (Bituminaria bituminosa var. albomarginata). Traits required in future pasture legumes include greater resilience to declining rainfall and more variable seasons, higher tolerance of soil acidity, higher phosphorous utilisation efficiency, lower potential to produce methane emissions in grazing ruminants, better integration into weed management strategies on mixed farms, and resistance to new pest and disease threats. Future opportunities include supplying new fodder markets and potential pharmaceutical and health uses for humans and livestock. New species could be considered in the future to overcome constraints of existing species, but their commercial success will depend upon perceived need, size of the seed market, ease of establishment, and management and safety of grazing animals and the environment. Molecular biology has a range of potential applications in pasture legume breeding, including marker-assisted and genomics-assisted selection and the identification of quantitative trait loci and candidate genes for important traits. Genetically modified pasture plants are unlikely to be commercialised until public concerns are allayed. Private seed companies are likely to play an increasingly important role in pasture legume development, particularly of mainstream species, but the higher risk and more innovative breakthroughs are likely to come from the public sector, provided the skills base for plant breeding and associated disciplines is maintained.

On the language and physiology of dormancy and quiescence in plants
Michael Considine, John A. Considine
2016· Journal of Experimental Botany153doi:10.1093/jxb/erw138

The language of dormancy is rich and poetic, as researchers spanning disciplines and decades have attempted to understand the spell that entranced 'Sleeping Beauty', and how she was gently awoken. The misleading use of 'dormancy', applied to annual axillary buds, for example, has confounded progress. Language is increasingly important as genetic and genomic approaches become more accessible to species of agricultural and ecological importance.