NobleBlocks

Federal Institute of São Paulo

UniversitySão Paulo, Brazil

Research output, citation impact, and the most-cited recent papers from Federal Institute of São Paulo (Brazil). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
9.5K
Citations
62.2K
h-index
83
i10-index
1.4K
Also known as
Centro Federal de Educação Tecnológica de São PauloFederal Institute of São PauloInstituto Federal de Educação, Ciência e Tecnologia de São PauloSão Paulo Federal Center of Technological Education

Top-cited papers from Federal Institute of São Paulo

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
Sergei Põlme, Kessy Abarenkov, R. Henrik Nilsson, Björn D. Lindahl +4 more
2020· Fungal Diversity1.1Kdoi:10.1007/s13225-020-00466-2

TEST 02 - Elsevier's Scopus, the largest abstract and citation database of peer-reviewed literature. Search and access research from the science, technology, medicine, social sciences and arts and humanities fields.

Machine Learning-Based Network Vulnerability Analysis of Industrial Internet of Things
Maede Zolanvari, Márcio Andrey Teixeira, Lav Gupta, Khaled M. Khan +1 more
2019· IEEE Internet of Things Journal507doi:10.1109/jiot.2019.2912022

It is critical to secure the Industrial Internet of Things (IIoT) devices because of potentially devastating consequences in case of an attack. Machine learning (ML) and big data analytics are the two powerful leverages for analyzing and securing the Internet of Things (IoT) technology. By extension, these techniques can help improve the security of the IIoT systems as well. In this paper, we first present common IIoT protocols and their associated vulnerabilities. Then, we run a cyber-vulnerability assessment and discuss the utilization of ML in countering these susceptibilities. Following that, a literature review of the available intrusion detection solutions using ML models is presented. Finally, we discuss our case study, which includes details of a real-world testbed that we have built to conduct cyber-attacks and to design an intrusion detection system (IDS). We deploy backdoor, command injection, and Structured Query Language (SQL) injection attacks against the system and demonstrate how a ML-based anomaly detection system can perform well in detecting these attacks. We have evaluated the performance through representative metrics to have a fair point of view on the effectiveness of the methods.

Rare species contribute disproportionately to the functional structure of species assemblages
Rafael P. Leitão, Jansen Zuanon, Sébastien Villéger, Stephen E. Williams +4 more
2016· Proceedings of the Royal Society B Biological Sciences486doi:10.1098/rspb.2016.0084

There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions.

Notes, outline and divergence times of Basidiomycota
Mao-Qiang He, Rui-Lin Zhao, Kevin D. Hyde, Dominik Begerow +4 more
2019· Fungal Diversity468doi:10.1007/s13225-019-00435-4

Abstract The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.

The genomes of two key bumblebee species with primitive eusocial organization
Ben M. Sadd, Seth M. Barribeau, Guy Bloch, Dirk C. de Graaf +4 more
2015· Genome Biology420doi:10.1186/s13059-015-0623-3

BACKGROUND: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. RESULTS: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. CONCLUSIONS: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation.

A Survey of Evolutionary Algorithms for Decision-Tree Induction
Rodrigo C. Barros, Márcio P. Basgalupp, André C. P. L. F. de Carvalho, Alex A. Freitas
2011· IEEE Transactions on Systems Man and Cybernetics Part C (Applications and Reviews)346doi:10.1109/tsmcc.2011.2157494

This paper presents a survey of evolutionary algorithms that are designed for decision-tree induction. In this context, most of the paper focuses on approaches that evolve decision trees as an alternate heuristics to the traditional top-down divide-and-conquer approach. Additionally, we present some alternative methods that make use of evolutionary algorithms to improve particular components of decision-tree classifiers. The paper's original contributions are the following. First, it provides an up-to-date overview that is fully focused on evolutionary algorithms and decision trees and does not concentrate on any specific evolutionary approach. Second, it provides a taxonomy, which addresses works that evolve decision trees and works that design decision-tree components by the use of evolutionary algorithms. Finally, a number of references are provided that describe applications of evolutionary algorithms for decision-tree induction in different domains. At the end of this paper, we address some important issues and open questions that can be the subject of future research.

Reference values for lung function tests: I. Static volumes
J. Alberto Neder, Solange Andreoni, A. Castelo-Filho, Luíz Eduardo Nery
1999· Brazilian Journal of Medical and Biological Research335doi:10.1590/s0100-879x1999000600006

Static lung volume (LV) measurements have a number of clinical and research applications; however, no previous studies have provided reference values for such tests using a healthy sample of the adult Brazilian population. With this as our main purpose, we prospectively evaluated 100 non-smoking subjects (50 males and 50 females), 20 to 80 years old, randomly selected from more than 8,000 individuals. Gender-specific linear prediction equations were developed by multiple regression analysis with total lung capacity (TLC), functional residual capacity (FRC), residual volume (RV), RV/TLC ratio and inspiratory capacity (IC) as dependent variables, and with age, height, weight, lean body mass and indexes of physical fitness as independent ones. Simpler demographic and anthropometric variables were as useful as more complex measurements in predicting LV values, independent of gender and age (R2 values ranging from 0.49 to 0.78, P < 0.001). Interestingly, prediction equations from North American and European studies overestimated the LV at low volumes and underestimated them at high volumes (P < 0.05). Our results, therefore, provide a more appropriate frame of reference to evaluate the normalcy of static lung volume values in Brazilian males and females aged 20 to 80 years.

Federated learning enables big data for rare cancer boundary detection
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller +4 more
2022· Nature Communications327doi:10.1038/s41467-022-33407-5

Although machine learning (ML) has shown promise across disciplines, out-of-sample generalizability is concerning. This is currently addressed by sharing multi-site data, but such centralization is challenging/infeasible to scale due to various limitations. Federated ML (FL) provides an alternative paradigm for accurate and generalizable ML, by only sharing numerical model updates. Here we present the largest FL study to-date, involving data from 71 sites across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, reporting the largest such dataset in the literature (n = 6, 314). We demonstrate a 33% delineation improvement for the surgically targetable tumor, and 23% for the complete tumor extent, over a publicly trained model. We anticipate our study to: 1) enable more healthcare studies informed by large diverse data, ensuring meaningful results for rare diseases and underrepresented populations, 2) facilitate further analyses for glioblastoma by releasing our consensus model, and 3) demonstrate the FL effectiveness at such scale and task-complexity as a paradigm shift for multi-site collaborations, alleviating the need for data-sharing.

Reviewing the world's edible mushroom species: A new evidence‐based classification system
Huili Li, Yang Tian, Nelson Menolli, Lei Ye +4 more
2021· Comprehensive Reviews in Food Science and Food Safety244doi:10.1111/1541-4337.12708

Wild mushrooms are a vital source of income and nutrition for many poor communities and of value to recreational foragers. Literature relating to the edibility of mushroom species continues to expand, driven by an increasing demand for wild mushrooms, a wider interest in foraging, and the study of traditional foods. Although numerous case reports have been published on edible mushrooms, doubt and confusion persist regarding which species are safe and suitable to consume. Case reports often differ, and the evidence supporting the stated properties of mushrooms can be incomplete or ambiguous. The need for greater clarity on edible species is further underlined by increases in mushroom-related poisonings. We propose a system for categorizing mushroom species and assigning a final edibility status. Using this system, we reviewed 2,786 mushroom species from 99 countries, accessing 9,783 case reports, from over 1,100 sources. We identified 2,189 edible species, of which 2,006 can be consumed safely, and a further 183 species which required some form of pretreatment prior to safe consumption or were associated with allergic reactions by some. We identified 471 species of uncertain edibility because of missing or incomplete evidence of consumption, and 76 unconfirmed species because of unresolved, differing opinions on edibility and toxicity. This is the most comprehensive list of edible mushrooms available to date, demonstrating the huge number of mushrooms species consumed. Our review highlights the need for further information on uncertain and clash species, and the need to present evidence in a clear, unambiguous, and consistent manner.

Improvements in the StArt tool to better support the systematic review process
Sandra Fabbri, Cleiton Carvalho Silva, Elis Montoro Hernandes, Fábio Octaviano +2 more
2016224doi:10.1145/2915970.2916013

Context: Systematic Review (SR) is a methodology used to find and aggregate relevant existing evidence about a specific research topic of interest. It can be very time-consuming depending on the number of gathered studies that need to be analyzed by researchers. One of the relevant tools found in the literature and preliminarily evaluated by researchers of SRs is StArt, which supports the whole SR process. It has been downloaded by users from more than twenty countries. Objective: To present new features available in StArt to support SR activities. Method: Based on users' feedback and the literature, new features were implemented and are available in the tool, like the SCAS strategy, snowballing techniques, the frequency of keywords and a word cloud for search string refining, collaboration among reviewers, and the StArt online community. Results: The new features, according to users' positive feedback, make the tool more robust to support the conduct of SRs. Conclusion: StArt is a tool that has been continuously developed such that new features are often available to improve the support for the SR process. The StArt online community can improve the interaction among users, facilitating the identification of improvements and new useful features.

An Overview of Particulate Matter Measurement Instruments
Simone Simões Amaral, João Andrade de Carvalho, Maria Angélica Martins Costa, Cleverson Pinheiro
2015· Atmosphere196doi:10.3390/atmos6091327

This review article presents an overview of instruments available on the market for measurement of particulate matter. The main instruments and methods of measuring concentration (gravimetric, optical, and microbalance) and size distribution Scanning Mobility Particle Sizer (SMPS), Electrical Low Pressure Impactor (ELPI), and others were described and compared. The aim of this work was to help researchers choose the most suitable equipment to measure particulate matter. When choosing a measuring instrument, a researcher must clearly define the purpose of the study and determine whether it meets the main specifications of the equipment. ELPI and SMPS are the suitable devices for measuring fine particles; the ELPI works in real time. In health-related studies, a Diffusion Charger is the instrument that best characterizes the surface of ultrafine particles. Several methods and different particle measuring instruments should be used to confirm the values obtained during sampling.

Sustainable digital transformation in small and medium enterprises (SMEs): A review on performance
Isotília Costa Melo, Geandra Alves Queiroz, Paulo Nocera Alves, Thales Botelho de Sousa +2 more
2023· Heliyon191doi:10.1016/j.heliyon.2023.e13908

Small and medium enterprises (SMEs) are responsible for 90% of all business and 50% of employment globally, mostly female jobs. Therefore, measuring SMEs' performance under the digital transformation (DT) through methods that encompass sustainability represents an essential tool for reducing poverty and gender inequality (United Nations Sustainable Development Goals). We aimed to describe and analyze the state-of-art performance evaluations of digital transformation in SMEs, mainly focusing on performance measurement. Also, we aimed to determine whether the tools encompass the three pillars of sustainability (environmental, social, and economic). Through a systematic literature review (SLR), a search on Web of Science (WoS) and Scopus resulted in the acceptance of 74 peer-reviewed papers published until December 2021. Additionally, a bibliometrics investigation was executed. Although there was no time restriction, the oldest paper was published in 2016, indicating that DT is a new research topic with increasing interest. Italy, China, and Finland are the countries that have the most published on the theme. Based on the results, a conceptual framework is proposed. Also, two future research directions are presented and discussed, one for theoretical and another for practical research. Among the theoretical development, it is essential to work on a widely accepted SME definition. Among the practical research, nine directions are identified-e.g., applying big data, sectorial and regional prioritization, cross-temporal investigations etc. Researchers can follow the presented avenues and roads to guide their researchers toward the most relevant topics with the most urgent necessity of investigation.

SCADA System Testbed for Cybersecurity Research Using Machine Learning Approach
Márcio Andrey Teixeira, Tara Salman, Maede Zolanvari, Raj Jain +2 more
2018· Future Internet170doi:10.3390/fi10080076

This paper presents the development of a Supervisory Control and Data Acquisition (SCADA) system testbed used for cybersecurity research. The testbed consists of a water storage tank’s control system, which is a stage in the process of water treatment and distribution. Sophisticated cyber-attacks were conducted against the testbed. During the attacks, the network traffic was captured, and features were extracted from the traffic to build a dataset for training and testing different machine learning algorithms. Five traditional machine learning algorithms were trained to detect the attacks: Random Forest, Decision Tree, Logistic Regression, Naïve Bayes and KNN. Then, the trained machine learning models were built and deployed in the network, where new tests were made using online network traffic. The performance obtained during the training and testing of the machine learning models was compared to the performance obtained during the online deployment of these models in the network. The results show the efficiency of the machine learning models in detecting the attacks in real time. The testbed provides a good understanding of the effects and consequences of attacks on real SCADA environments.

Green absorptive capacity: A mediation‐moderation model of knowledge for innovation
Larissa Marchiori Pacheco, Marlon Fernandes Rodrigues Alves, Lara Bartocci Liboni
2018· Business Strategy and the Environment166doi:10.1002/bse.2208

Abstract Supported by the dynamic capabilities literature, this study examines the linkages between environmental factors, organizational factors and green innovation performance in light of the moderating effect of green absorptive capacity. Based on a sample of 78 firms in the electric power industry in Brazil, a mediation‐moderation model is proposed and tested using partial least squares structural equation modelling, which allows the analysis of both direct and indirect relationships. The results yielded general support for the study hypotheses, suggesting that (i) environmental factors have both a direct and indirect positive effect on green innovation performance, (ii) organizational factors fully mediate the effect of environmental factors on green innovation performance, and (iii) green absorptive capacity has a positive moderating impact on the mediation model. These findings provide empirical evidence of a better understanding of the antecedents of green innovation performance by highlighting the role of green absorptive capacity.

Adaptive Selective Harmonic Minimization Based on ANNs for Cascade Multilevel Inverters With Varying DC Sources
Faete Filho, Helder Zandonadi Maia, Tiago H. A. Mateus, Burak Ozpineci +2 more
2012· IEEE Transactions on Industrial Electronics158doi:10.1109/tie.2012.2224072

A new approach for modulation of an 11-level cascade multilevel inverter using selective harmonic elimination is presented in this paper. The dc sources feeding the multilevel inverter are considered to be varying in time, and the switching angles are adapted to the dc source variation. This method uses genetic algorithms to obtain switching angles offline for different dc source values. Then, artificial neural networks are used to determine the switching angles that correspond to the real-time values of the dc sources for each phase. This implies that each one of the dc sources of this topology can have different values at any time, but the output fundamental voltage will stay constant and the harmonic content will still meet the specifications. The modulating switching angles are updated at each cycle of the output fundamental voltage. This paper gives details on the method in addition to simulation and experimental results.

Vegetação, unidades fitoecológicas e diversidade paisagística do estado do Ceará
Marcelo Freire Moro, Mariana Bezerra Macêdo, Marcelo Martins de Moura-Fé, Antônio Sérgio Farias Castro +1 more
2015· Rodriguésia154doi:10.1590/2175-7860201566305

ResumoEsse artigo apresenta uma revisão dos tipos vegetacionais do estado do Ceará a partir de sua diversidade paisagística, centrando-se, notadamente, nas condições climáticas e unidades geomorfológicas. Com base em levantamentos de campo, literatura especializada e mapas das unidades fitoecológicas e geomorfológicas, pretendemos expor, de forma didática, a caracterização, distribuição e principais ameaças antrópicas concernentes a cada vegetação. Por fim, utilizamos métodos de análise multivariada para comparar a similaridade de espécies entre os diferentes levantamentos florísticos disponíveis para o estado e discutimos os padrões biogeográficos observados.

On the efficacy of texture analysis for crowd monitoring
Aparecido Nilceu Marana, L.F. Costa, Roberto Lotufo, Sergio A. Velastín
2002148doi:10.1109/sibgra.1998.722773

The goal of this work is to assess the efficacy of texture measures for estimating levels of crowd densities in images. This estimation is crucial for the problem of crowd monitoring and control. The assessment is carried out on a set of nearly 300 real images captured from Liverpool Street Train Station, London, UK, using texture measures extracted from the images through the following four different methods: gray level dependence matrices, straight line segments, Fourier analysis, and fractal dimensions. The estimations of crowd densities are given in terms of the classification of the input images in five classes of densities (very low, low, moderate, high and very high). Three types of classifiers are used: neural (implemented according to the Kohonen model), Bayesian, and an approach based on fitting functions. The results obtained by these three classifiers, using the four texture measures, allowed the conclusion that, for the problem of crowd density estimation, texture analysis is very effective.

An analysis of BPM lifecycles: from a literature review to a framework proposal
Rinaldo Macedo de Morais, Samir Kazan, Sílvia Inês Dallavalle de Pádua, André Lucirton Costa
2014· Business Process Management Journal146doi:10.1108/bpmj-03-2013-0035

Purpose – Business process management (BPM) is an emerging research theme in management. BPM lifecycles are models that systematize the steps and activities that should be followed for conducting BPM projects. The theoretical and empirical studies present differences regarding the number of steps and activities that should be carried out for promoting BPM. Using the BPM lifecycle model of the Association of Business Process Management Professionals (ABPMP) – an entity that proposes a common body of knowledge on BPM, as a parameter, this paper conducts a literature review to investigate lifecycle models within the academic-scientific ambit, identify convergences and variations and analyze the alignment between business strategy and processes in BPM activities in these models. The purpose of this paper is to propose a framework that deals with alignment between strategy and business processes in an explicit manner. Design/methodology/approach – A literature review was conducted aimed at prospecting papers about the BPM lifecycle. For such, the Scopus, Google Schoolar and Science Direct databases were accessed. The selection process was structured in two steps: the first filtered studies based on a reading of the title, abstract and key words; the second step consisted of selecting papers based on a complete reading of those papers resulting from the first step and from the references they contained. Findings – Seven BPM lifecycle models were selected and analyzed. A comparison was presented between the model steps and the model proposed by ABPMP. The particularities of each model were identified and the study suggests an alignment of these models with the BPM lifecycle proposed by ABPMP, in particular with the analysis, design and modeling, implementation and monitoring and control steps. Four models do not include the planning step, whereas four others do not incorporate refining. The majority of models studied projects the automation of business processes. This study reinforces that ABPMP's BPM lifecycle is a reference model, observing that the activities in the other models studied are projected in it. However, it was observed that in the ABPMP model as well as the models studied, there is little emphasis on organization strategy and on defining process architecture. Thus, this study suggests the incorporation of activities proposed by Burlton (2010) as an additional instrument for the ABPMP BPM lifecycle model to align strategy to processes in BPM projects. For such, a framework was proposed that deals with alignment between strategy and business process in an explicit manner. Originality/value – This study presents a typology of BPM lifecycle models, with common characteristics and peculiarities, and it analyzes the alignment between processes and strategy in the models’ activities. This study can assist professionals in the adoption of a model for implementing BPM projects and for continuous improvement.

Repurposing approved drugs as inhibitors of SARS-CoV-2 S-protein from molecular modeling and virtual screening
Osmair Vital de Oliveira, Gerd B. Rocha, Andrew S. Paluch, Luciano T. Costa
2020· Journal of Biomolecular Structure and Dynamics145doi:10.1080/07391102.2020.1772885

MD simulations were performed for the three best ligands@S-protein complexes and the binding energies were calculated using the MM/PBSA approach. Overall, it is highlighted an important strategy, some key residues, and chemical groups which may be considered on clinical trials for COVID-19 outbreak. [Formula: see text]Communicated by Ramaswamy H. Sarma.

Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited
Nicolas Chazot, Niklas Wahlberg, André Victor Lucci Freitas, Charles Mitter +4 more
2019· Systematic Biology143doi:10.1093/sysbio/syz002

The need for robust estimates of times of divergence is essential for downstream analyses, yet assessing this robustness is still rare. We generated a time-calibrated genus-level phylogeny of butterflies (Papilionoidea), including 994 taxa, up to 10 gene fragments and an unprecedented set of 12 fossils and 10 host-plant node calibration points. We compared marginal priors and posterior distributions to assess the relative importance of the former on the latter. This approach revealed a strong influence of the set of priors on the root age but for most calibrated nodes posterior distributions shifted from the marginal prior, indicating significant information in the molecular data set. Using a very conservative approach we estimated an origin of butterflies at 107.6 Ma, approximately equivalent to the latest Early Cretaceous, with a credibility interval ranging from 89.5 Ma (mid Late Cretaceous) to 129.5 Ma (mid Early Cretaceous). In addition, we tested the effects of changing fossil calibration priors, tree prior, different sets of calibrations and different sampling fractions but our estimate remained robust to these alternative assumptions. With 994 genera, this tree provides a comprehensive source of secondary calibrations for studies on butterflies.