Georgi Nadjakov Institute of Solid State Physics

We systematically study how diverse physiologic systems in the human organism dynamically interact and collectively behave to produce distinct physiologic states and functions. This is a fundamental question in the new interdisciplinary field of Network Physiology, and has not been previously explored. Introducing the novel concept of Time Delay Stability (TDS), we develop a computational approach to identify and quantify networks of physiologic interactions from long-term continuous, multi-channel physiological recordings. We also develop a physiologically-motivated visualization framework to map networks of dynamical organ interactions to graphical objects encoded with information about the coupling strength of network links quantified using the TDS measure. Applying a system-wide integrative approach, we identify distinct patterns in the network structure of organ interactions, as well as the frequency bands through which these interactions are mediated. We establish first maps representing physiologic organ network interactions and discover basic rules underlying the complex hierarchical reorganization in physiologic networks with transitions across physiologic states. Our findings demonstrate a direct association between network topology and physiologic function, and provide new insights into understanding how health and distinct physiologic states emerge from networked interactions among nonlinear multi-component complex systems. The presented here investigations are initial steps in building a first atlas of dynamic interactions among organ systems.

The existing theories which aim to explain the extraordinary optical transmission of a metallic film pierced by a two-dimensional subwavelength hole array [T.W. Ebbesen, H.J. Lezec, H.F. Ghaemi, T. Thio, and P.A. Wolff, Natural (London) 391, 667 (1998)] all have in common the following feature: instead of studying the two-dimensional crossed grating resulting from the hole array, they consider a one-dimensional grating with infinite slits. We show that such a simplification introduces an efficient channel for light transmission in lamellar gratings, which does not exist for hole arrays. Therefore in order to explain the relatively high transmission observed by Ebbesen et al., it is necessary to take into account the existence of the holes in the array. In this paper we develop a two-dimensional analysis of the experiment performed by Ebbesen et al. No simplification is introduced. This allows us to obtain theoretically the long-wavelength peak reported by Ebbesen et al. with the same grating thickness as the one used by these authors. We also review and study in detail the various contributions devoted to this very surprising effect.

Thermal fluctuations of giant lipid vesicles have been investigated both theoretically and experimentally. At the theoretical level, the model developed here takes explicitly into account the conservation of vesicle volume and membrane area. Under these conditions, the amplitude of thermal fluctuations depends critically not only on the bending elasticity of the bilayer, but also on the membrane tension and/or hydrostatic pressure difference between the interior and exterior of the vesicle. At the experimental level, the determination of the bending modulus kc first requires the analysis of a large number (several hundred) of vesicle contours to obtain a significant statistics. Secondly, the contribution of the experimental error on the contour coordinates, which results in a white noise on the Fourier amplitudes, must be eliminated, and this can be done by using the angular autocorrelation function of the fluctuations. Finally, the amplitudes of harmonics having short correlation times must be corrected from the effect of the integration time (40 ms) of the video camera, which otherwise leads to an overestimation of kc. All these theoretical and experimental requirements have been considered in the analysis of the thermal fluctuations of 42 giant vesicles composed of egg phosphatidylcholine. The behaviour of this population of vesicles can be accounted for with a bending modulus kc equal to 0.4 - 0.5 x 10-19 J, and extremely low membrane tensions, ranging below 15 × 10-5 mN/m.

The polarized Raman spectra of orthorhombic $R{\mathrm{MnO}}_{3}$ series $(R=\mathrm{La},\mathrm{Pr},\mathrm{Nd},\mathrm{Sm},\mathrm{Eu},\mathrm{Gd},\mathrm{Tb},\mathrm{Dy},\mathrm{Ho},\mathrm{Y})$ were studied at room temperature. The variation of phonon frequencies with $R$ ionic radius ${r}_{R}$ as a whole confirms the commonly accepted Raman line assignments with two noticeable exceptions: (1) with decreasing ${r}_{R}$ the stretching ${A}_{g}(1)$ and bending ${A}_{g}(3)$ modes strongly mix for $R=\mathrm{Sm}$ to Tb, while for further decrease or ${r}_{R}$ $(R=\mathrm{Dy},\mathrm{Ho},\mathrm{Y})$ the ${A}_{g}(3)$ mode is observed at higher frequency than ${A}_{g}(1)$ mode; (2) similar distortion-dependent mode mixing takes place for the rotational ${A}_{g}(2)$ and $\mathrm{O}1(x)$ $[{A}_{g}(7)]$ modes. The mode mixing is particularly strong for the $R{\mathrm{MnO}}_{3}$ compounds with ${r}_{R}$ values close to the transition from $A$ type to incommensurate sinusoidal antiferromagnetic ordering at low temperatures. The frequency of rotational ${A}_{g}(2)$ and ${A}_{g}(4)$ modes scales to the angles of ${\mathrm{MnO}}_{6}$ $[101]$ and $[010]$ rotations, respectively, and could be used as a measure of their value.

The sensitivity of grating-coupled Surface Plasmon Polaritons (SPPs) on metallic surface has been exploited to investigate the correlation between ripples formation under ultrashort laser exposure and SPPs generation conditions. Systematic examination of coupling of single ultrashort laser pulse on gratings with appropriate periods ranging from 440 nm to 800 nm has been performed. Our approach reveals that a surface plasmon is excited only for an appropriate grating period, the nickel sample exhibits fine ripples pattern, evidencing the plasmonic nature of ripples generation. We propose a systematic investigation supported by a comprehensive study on the obtained modulation of such a coupling efficiency by means of a phenomenological Drude-Lorentz model which captures possible optical properties modification under femtosecond irradiation.

Integrated physiological systems, such as the cardiac and the respiratory system, exhibit complex dynamics that are further influenced by intrinsic feedback mechanisms controlling their interaction. To probe how the cardiac and the respiratory system adjust their rhythms, despite continuous fluctuations in their dynamics, we study the phase synchronization of heartbeat intervals and respiratory cycles. The nature of this interaction, its physiological and clinical relevance, and its relation to mechanisms of neural control is not well understood. We investigate whether and how cardiorespiratory phase synchronization (CRPS) responds to changes in physiological states and conditions. We find that the degree of CRPS in healthy subjects dramatically changes with sleep-stage transitions and exhibits a pronounced stratification pattern with a 400% increase from rapid eye movement sleep and wake, to light and deep sleep, indicating that sympatho-vagal balance strongly influences CRPS. For elderly subjects, we find that the overall degree of CRPS is reduced by approximately 40%, which has important clinical implications. However, the sleep-stage stratification pattern we uncover in CRPS does not break down with advanced age, and surprisingly, remains stable across subjects. Our results show that the difference in CRPS between sleep stages exceeds the difference between young and elderly, suggesting that sleep regulation has a significantly stronger effect on cardiorespiratory coupling than healthy aging. We demonstrate that CRPS and the traditionally studied respiratory sinus arrhythmia represent different aspects of the cardiorespiratory interaction, and that key physiologic variables, related to regulatory mechanisms of the cardiac and respiratory systems, which influence respiratory sinus arrhythmia, do not affect CRPS.

The zero-order diffraction efficiency anomalies of a corrugated dielectric waveguide are studied theoretically in detail. A new and surprising phenomenon is observed: the efficiency changes from 0 to 100 per cent in the vicinity of the excitation of guided waves. The fundamental parameters of the system are found in the case where only one order is propagating and some of their properties are shown. The behaviour of the efficiency curves is explained by a phenomenological theory and a comparison with numerical rigorous results is made.

An opto-chemical in-fibre Bragg grating (FBG) sensor for refractive index measurement in liquids has been developed using fibre side-polishing technology. At a polished site where the fibre cladding has partly been removed, a FBG is exposed to a liquid analyte via evanescent field interaction of the guided fibre mode. The Bragg wavelength of the FBG is obtained in terms of its dependence on the refractive index of the analyte. Modal and wavelength dependences have been investigated both theoretically and experimentally in order to optimize the structure of the sensor. Using working wavelengths far above the cut-off wavelength results in an enhancement of the sensitivity of the sensor. Measurements with different mode configurations lead to the separation of cross sensitivities. Besides this, a second FBG located in the unpolished part can be used to compensate for temperature effects. Application examples for monitoring fuels of varying quality as well as salt concentrations under deep borehole conditions are presented.

Despite the vast progress and achievements in systems biology and integrative physiology in the last decades, there is still a significant gap in understanding the mechanisms through which (i) genomic, proteomic and metabolic factors and signaling pathways impact vertical processes across cells, tissues and organs leading to the expression of different disease phenotypes and influence the functional and clinical associations between diseases, and (ii) how diverse physiological systems and organs coordinate their functions over a broad range of space and time scales and horizontally integrate to generate distinct physiologic states at the organism level. Two emerging fields, network medicine and network physiology, aim to address these fundamental questions. Novel concepts and approaches derived from recent advances in network theory, coupled dynamical systems, statistical and computational physics show promise to provide new insights into the complexity of physiological structure and function in health and disease, bridging the genetic and sub-cellular level with inter-cellular interactions and communications among integrated organ systems and sub-systems. These advances form first building blocks in the methodological formalism and theoretical framework necessary to address fundamental problems and challenges in physiology and medicine. This 'focus on' issue contains 26 articles representing state-of-the-art contributions covering diverse systems from the sub-cellular to the organism level where physicists have key role in laying the foundations of these new fields.

By virtue of their unique physicochemical properties, gold nanoparticles (AuNPs) have gained significant interest in a broad range of biomedical applications such as sensors, diagnosis, and therapy. AuNPs are generally synthesized via different conventional physical and chemical methods, which often use harmful chemicals that induce health hazards and pollute the environment. To overcome these issues, green synthesis techniques have evolved as alternative and eco-friendly approaches to the synthesis of environmentally safe and less-expensive nanoparticles using naturally available metabolites from plants and microorganisms such as bacteria, fungi, and algae. This review provides an overview of the advances in the synthesis of AuNPs using different biological resources with examples, and their profound applications in biomedicine. A special focus on the biosynthesis of AuNPs using different medicinal plants and their multifunctional applications in antibacterial, anti-inflammatory, and immune responses are featured. Additionally, the applications of AuNPs in cancer theranostics, including contrast imaging, drug delivery, hyperthermia, and cancer therapeutics, are comprehensively discussed. Moreover, this review will shed light on the importance of the green synthesis approach, and discuss the advantages, challenges, and prospects in this field.

Entropy measures are widely applied to quantify the complexity of dynamical systems in diverse fields. However, the practical application of entropy methods is challenging, due to the variety of entropy measures and estimators and the complexity of real-world time series, including nonstationarities and long-range correlations (LRC). We conduct a systematic study on the performance, bias, and limitations of three basic measures (entropy, conditional entropy, information storage) and three traditionally used estimators (linear, kernel, nearest neighbor). We investigate the dependence of entropy measures on estimator- and process-specific parameters, and we show the effects of three types of nonstationarities due to artifacts (trends, spikes, local variance change) in simulations of stochastic autoregressive processes. We also analyze the impact of LRC on the theoretical and estimated values of entropy measures. Finally, we apply entropy methods on heart rate variability data from subjects in different physiological states and clinical conditions. We find that entropy measures can only differentiate changes of specific types in cardiac dynamics and that appropriate preprocessing is vital for correct estimation and interpretation. Demonstrating the limitations of entropy methods and shedding light on how to mitigate bias and provide correct interpretations of results, this work can serve as a comprehensive reference for the application of entropy methods and the evaluation of existing studies.

A reentrant novel phase is observed in the hexagonal ferroelectric HoMnO3 in the presence of magnetic fields in the temperature range defined by a plateau of the dielectric constant anomaly. The plateau evolves with fields from a narrow dielectric peak at the Mn-spin rotation transition at 32.8 K in zero field. The anomaly appears both as a function of temperature and as a function of magnetic field without detectable hysteresis. This is attributed to the indirect coupling between the ferroelectric (FE) and antiferromagnetic (AFM) orders, arising from an FE-AFM domain wall effect.

The effects of bias temperature stress and irradiation in commercial p-channel power VDMOS transistors were investigated. In order to additionally elucidate the effects that take place in these power devices during the irradiation after the NBT stress, the relative contributions of gate oxide charge <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$(\Delta V_{ot}/\Delta V_{\text{TH}})$</tex> and interface traps <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$(\Delta V_{\mathrm{i}\mathrm{t}}/\Delta V_{\text{TH}})$</tex> to the threshold voltage shifts are presented and analyzed. It was found that in the case of irradiation without gate voltage the duration of the preirradiation NBT stress had a more pronounced impact on the radiation response of power VDMOS transistors, and that the contribution of the oxide trapped charge plays a more pronounced role in components previously NBT stressed for 1 hour than in those stressed for 1 week.

We present a classical analog of electromagnetically induced transparency occurring when light is absorbed by a two-dimensional lattice of metallic spheres mounted on an asymmetric dielectric waveguide. The transparency is manifested as a spectral hole within the surface-plasmon absorption peak of the metallic spheres and is a result of destructive interference of the waveguide modes with incident radiation. The presence of transparency windows is accompanied by slow light effect wherein the group velocity is reduced by a factor of 6000. At the same time, the minimum length for storing a bit of information is of the order of 100 nm. The proposed setup is a much easier means to achieve transparency and slow light compared to existing atomic, solid-state, and photonic systems and allows for the realization of ultracompact optical delay lines and buffers.

Silicon-rich silicon oxide thin films have been prepared by thermal evaporation of silicon monoxide in vacuum. The SiOx film composition (1.1⩽ x ⩽1.7) has been controlled by varying the deposition rate and residual pressure in the chamber. Long time stability of all films has been ensured by a postdeposition annealing at 523 K for 30 min in Ar atmosphere. Some films were further annealed at 973 K and some others at 1303 K. Raman scattering measurements have implied the formation of amorphous silicon nanoparticles in films annealed at 973 K and Si nanocrystals in films annealed at 1303 K. The latter conclusion is strongly supported by high resolution electron microscopy studies which show a high density of Si nanocrystals in these films. Photoluminescence has been observed from both amorphous and crystalline nanoparticles and interpreted in terms of band-to-band recombination in the nanoparticles having average size greater than 2.5 nm and carrier recombination through defect states in smaller nanoparticles.

Magnetic and magnetocaloric properties of HoMn2O5 single crystals were investigated. HoMn2O5 undergoes a large conventional magnetocaloric effect around 10 K. The magnetocaloric effect was found to present a giant anisotropy. Consequently, a large magnetocaloric effect (−ΔSR,max= 12.43 J/kg K for 7 T) can be obtained simply by rotating the single crystal HoMn2O5 within the cb plane in constant magnetic field instead of moving it in and out of the magnetic field zone. This can open the way for the implementation of compact, simplified, and efficient rotary magnetic refrigerators.

functional complexity, leading to complex, transient, fluctuating and nonlinear output dynamics Basic physiology and clinical medicine widely employ a reductionist approach, and consider health and disease through the prism of the structural organization and dynamics of individual organ systems. Further, physiological states and functions at the organism level are traditionally defined by the dynamics of organ systems, their modulation and changes in response to transitions in biochemical signaling and neuro-autonomic regulation due to internal, external and pathologic perturbations (

Observation of both tensio-active and emulsifying activities indicated that biosurfactants were produced by the newly isolated and promising strain Pseudomonas putida 21BN. The biosurfactants were identified as rhamnolipids, the amphiphilic surface-active glycolipids usually secreted by Pseudomonas spp. Their production was observed when the strain was grown on soluble substrates, such as glucose or on poorly soluble substrates, such as hexadecane, reaching values of 1.2 g l(-1). When grown on hexadecane as the sole carbon source the biosurfactant lowered the surface tension of the medium to 29 mN m(-1) and formed stable and compact emulsions with emulsifying activity of 69%.

The Raman spectra of single crystals of ${\text{NiFe}}_{2}{\text{O}}_{4}$ were studied in various scattering configurations in close comparison with the corresponding spectra of ${\text{Ni}}_{0.7}{\text{Zn}}_{0.3}{\text{Fe}}_{2}{\text{O}}_{4}$ and ${\text{Fe}}_{3}{\text{O}}_{4}$. The number of experimentally observed Raman modes exceeds significantly that expected for a normal spinel structure and the polarization properties of most of the Raman lines provide evidence for a microscopic symmetry lower than that given by the $Fd\overline{3}m$ space group. We argue that the experimental results can be explained by considering the short-range 1:1 ordering of ${\text{Ni}}^{2+}$ and ${\text{Fe}}^{3+}$ at the $B$ sites of inverse spinel structure, most probably of tetragonal $P{4}_{1}22/P{4}_{3}22$ symmetry.

We show that the quantum interference between two spontaneous emission channels can be greatly enhanced when a three-level V-type atom is placed near plasmonic nanostructures such as metallic slabs, nanospheres, or periodic arrays of metal-coated spheres. The spontaneous emission rate is calculated by a rigorous first-principles electromagnetic Green's tensor technique. The enhancement of quantum interference is attributed to the strong dependence of the spontaneous emission rate on the orientation of an atomic dipole relative to the surface of the nanostructure at the excitation frequencies of surface plasmons.