Indian Institute of Horticultural Research

The poultry industry is one of the largest and fastest growing agro-based industries in the world. This can be attributed to an increasing demand for poultry meat and egg products. However, a major problem facing the poultry industry is the large-scale accumulation of wastes including manure and litter which may pose disposal and pollution problems unless environmentally and economically sustainable management technologies are evolved. Most of the litter produced by the poultry industry is currently applied to agricultural land as a source of nutrients and soil amendment. However environmental pollution, resulting from nutrient and contaminant leaching can occur when poultry litter is applied under soil and climatic conditions that do not favour agronomic utilisation of the manure-borne nutrients. This review examines the composition of poultry litter in relation to nutrient content and environmental contaminants, its value as a nutrient source, soil amendment, animal feed and fuel source, and cost-effective innovative technologies for improving its value. Poultry litter provides a major source of nitrogen, phosphorus and trace elements for crop production and is effective in improving physical and biological fertility, indicating that land application remains as the main option for the utilisation of this valuable resource. The alternative use of poultry litter; as an animal feed and fuel source, is limited by contaminants, and high moisture content, respectively. The review proposes best management practices to mitigate environmental consequences associated with air and water quality parameters that are impacted by land application in order to maintain the continued productivity, profitability, and sustainability of the poultry industry.

A versatile stain has been developed for demonstrating pollen, fungal hyphae and spores, bacteria and yeasts. The mixture is made by compounding in the following order: ethanol, 20 ml; 1% malachite green in 95% ethanol, 2 ml; distilled water, 50 ml; glycerol, 40 ml; acid fuchsin 1% in distilled water, 10 ml; phenol, 5 g and lactic acid, 1-6 ml. A solution has also been formulated to destain overstained pollen mounts. Ideally, aborted pollen grains are stained green and nonaborted ones crimson red. Fungal hyphae and spores take a bluish purple color and host tissues green. Fungi, bacteria and yeasts are stained purple to red. The concentration of lactic acid in the stain mixture plays an important role in the differential staining of pollen. For staining fungi, bacteria and yeasts, the stain has to be acidic, but its concentration is not critical except for bacteria. In the case of pollen, staining can be done in a drop of stain on a slide or in a few drops of stain in a vial. Pollen stained in the vial can be used immediately or stored for later use. Staining is hastened by lightly flaming the slides or by storing at 55±2 C for 24 hr. Bacteria and yeasts are fixed on the slide in the usual manner and then stained. The stock solution is durable, the staining mixture is very stable and the color of the mounted specimens does not fade on prolonged storage. Slides are semipermanent and it is not necessary to ring the coverslip provided 1-2 drops of stain are added if air bubbles appear below the coverslip. The use of differentially stained pollen mounts in image analyzers for automatic counting and recording of aborted and nonaborted pollen is also discussed.

We propose a simple technique for bacterial and yeast cfu estimations from diverse samples with no prior idea of viable counts, designated as single plate-serial dilution spotting (SP-SDS) with the prime recommendation of sample anchoring (100 stocks). For pure cultures, serial dilutions were prepared from 0.1 OD (100) stock and 20 μl aliquots of six dilutions (101–106) were applied as 10–15 micro-drops in six sectors over agar-gelled medium in 9-cm plates. For liquid samples 100–105 dilutions, and for colloidal suspensions and solid samples (10% w/v), 101–106 dilutions were used. Following incubation, at least one dilution level yielded 6–60 cfu per sector comparable to the standard method involving 100 μl samples. Tested on diverse bacteria, composite samples and Saccharomyces cerevisiae, SP-SDS offered wider applicability over alternative methods like drop-plating and track-dilution for cfu estimation, single colony isolation and culture purity testing, particularly suiting low resource settings.

Photosynthesis is crucial for sustaining life on this planet and necessary for plant growth and development. Abiotic stresses such as high and low temperatures, and excess, or deficit of water limit the crucial plant processes, thus threatening the global food security. However, recent molecular approaches allowed elucidation of the photosynthetic components/compounds and their efficiency under stress conditions. In the present scenario, these approaches are not enough to reduce the yield penalty due to the reduction in photosynthetic efficiency. Therefore, comprehensive data on plant behaviour and stress crosstalk networks could assist in understanding the in-depth mechanism of photosynthesis. In recent years, information regarding crosstalk, signalling characterization of candidate genes, and responses to multiple stressors have advanced our knowledge to understand the mechanism of photosynthesis. Therefore, in this review, we provide a comprehensive overview of various studies conducted on photosynthesis under multiple abiotic stress factors that affect the photosynthetic efficiency of a plant. We also discuss the role of crosstalk signalling compounds (plant growth regulators and micro RNAs) for an in-depth understanding of the photosynthesis mechanism. Finally, based on our gathered data set, the mechanism of damage and adaptive response of photosynthesis under multiple stressors are explained to enhance the scientific community's knowledge toward boosting photosynthesis and to accelerate stress tolerance strategies for crop improvement.

Abstract Fluorescent Pseudomonads belong to plant Growth Promoting Rhizobacteria (PGPR), the important group of bacteria that play a major role in the plant growth promotion, induced systemic resistance, biological control of pathogens etc. Many strains of Pseudomonas fluorescens are known to enhance plant growth promotion and reduce severity of various diseases. The efficacy of bacterial antagonists in controlling fungal diseases was often better as alone, and sometimes in combination with fungicides. The present review refers to occurrence, distribution, mechanism, growth requirements of P. fluorescens and diseases controlled by the bacterial antagonist in different agricultural and horticultural crops were discussed. The literature in this review helps in future research programmes that aim to promote P. fluorescens as a potential bio-pesticide for augmentative biological control of many diseases of agriculture and horticultural importance.

SummaryDNA-based RAPD (Random Amplification of Polymorphic DNA) markers have been used extensively to study genetic relationships in a number of fruit crops. A wide genetic diversity exists in the mango fruit in India. Present day commercial cultivars originated mainly from this subcontinent. In this study, 18 commercial mango cultivars, traditionally grown in western, southern, northern and eastern parts of India, were selected to assess genetic relatedness. Total genomic DNA was extracted and subjected to RAPD analysis using 30 arbitrary 10-mer primers. Of these, 27 primers amplified mango genomic DNA. None of these primers produced unique band pattern for each cultivar. RAPD data were used to calculate a squared Euclidean distance matrix, and based on this cluster analysis was done using a minimum variance algorithm. Cluster analysis clearly showed two groups—the first consisting of western, northern and eastern mango cultivars and the second group consisting of southern cultivars. From the analysis of results, it appears the majority of mango cultivars originated from a local mango genepool and were domesticated later.

Climate change is a critical yield–limiting factor that has threatened the entire global crop production system in the present scenario. The use of biostimulants in agriculture has shown tremendous potential in combating climate change–induced stresses such as drought, salinity, temperature stress, etc. Biostimulants are organic compounds, microbes, or amalgamation of both that could regulate plant growth behavior through molecular alteration and physiological, biochemical, and anatomical modulations. Their nature is diverse due to the varying composition of bioactive compounds, and they function through various modes of action. To generate a successful biostimulatory action on crops under different parameters, a multi– omics approach would be beneficial to identify or predict its outcome comprehensively. The ‘ omics’ approach has greatly helped us to understand the mode of action of biostimulants on plants at cellular levels. Biostimulants acting as a messenger in signal transduction resembling phytohormones and other chemical compounds and their cross–talk in various abiotic stresses help us design future crop management under changing climate, thus, sustaining food security with finite natural resources. This review article elucidates the strategic potential and prospects of biostimulants in mitigating the adverse impacts of harsh environmental conditions on plants.

Nanobiotechnology, the bio-branch of nanotechnology is considered to be one of the fastest emerging research fields. Biosynthesis of metallic nanoparticles is currently under exploitation. Use of plant and plant materials for the synthesis of Zinc nanoparticles is relatively new and exciting research field. The biogenic zinc nanoparticles were synthesized using the leaves of Parthenium hysterophorous by green synthesis route. UV–VIS absorption spectroscopy was used to monitor the quantitative formation of zinc nanoparticles. The characteristics of the synthesized zinc nanoparticles were studied using scanning electron microscopy and nanoparticle analyzer. Zinc nanoparticles were observed to be spherical in shape with size range of 16 to 108.5 nm. The measured zeta potentials varied from 100.4 to 117.20 mV indicate high dispersion of the zinc nanoparticles. The synthesized zinc nanoparticles showed good enzymatic activity and microbial activity. The physiological parameters increased from 30 to 60 days of sowing when compared to control.

Greenhouse-grown tree ripe (TR) and mature green (MG) mangoes (cv. Irwin) were exposed to high electric field treatment before 20 and 30 days of storage at 5 degrees C. MG fruits were allowed to ripen at room temperature after low-temperature storage. Fruit physical quality attributes, ascorbic acid, carotene, quercetin, total phenols, and antioxidant capacity were estimated before and after the storage period. Antioxidant capacity of fruit juice was estimated using the ferric reducing antioxidant power (FRAP) assay. Fruit firmness decreased significantly during storage. Titratable acidity decreased 20 days after storage. Total soluble solids did not change during storage. Antioxidant capacity of fruits remained unchanged up to 20 days of storage period and decreased thereafter. Total phenol and carotenes increased during storage. Antioxidant capacity of fruits was significantly correlated only to ascorbic acids. Peel color and carotenes were higher in TR fruits, whereas titratable acidity and firmness were higher in MG fruits. There was no significant difference in other parameters between the stages of picking. Electric field pretreatment affected the respiration and antioxidant capacity of TR fruits and did not have any significant affect on other parameters. TR mangoes of cv. Irwin are more suitable for low-temperature storage and can be successfully stored for up to 20 days at 5 degrees C without any significant losses in functional properties and quality attributes.

Field crops are subjected to drought at different growth stages and cause for substantial yield loss in major crops, thus threaten to global food security. The crop researcher have evaluated numerous physiological, biochemical and molecular strategies to combat drought stresses but these approaches are not enough in present scenario. Therefore, it is argued that plants can be primed by assorted organic and in-organic promoters for excelling fortitude under stress conditions. Hence, seed priming with different agents is an auspicious area of research in stress biology and crop stress management, for conferring tolerance when plants are subjected to drought stress. However, the adaptation and tolerance mechanisms of drought stress are complex and quantitative in nature, which have been explored at physiological, biochemical and molecular levels thoroughly in this review. The concept of stress memory and its implication in future generation has also been discussed. Finally, in this review the challenges and opportunities of seed priming with effective application in crop stress management along with expanding the knowledge on deep understanding of drought stress tolerance to reduce the future yield gap are discussed thoroughly.

Abstract Endophytes, both of bacterial and fungal origin, are ubiquitously present in all plants. While their origin and evolution are enigmatic, there is burgeoning literature on their role in promoting growth and stress responses in their hosts. We demonstrate that a salt-tolerant endophyte isolated from salt-adapted Pokkali rice, a Fusarium sp ., colonizes the salt-sensitive rice variety IR-64, promotes its growth under salt stress and confers salinity stress tolerance to its host. Physiological parameters, such as assimilation rate and chlorophyll stability index were higher in the colonized plants. Comparative transcriptome analysis revealed 1348 up-regulated and 1078 down-regulated genes in plants colonized by the endophyte. Analysis of the regulated genes by MapMan and interaction network programs showed that they are involved in both abiotic and biotic stress tolerance, and code for proteins involved in signal perception (leucine-rich repeat proteins, receptor-like kinases) and transduction (Ca 2+ and calmodulin-binding proteins), transcription factors, secondary metabolism and oxidative stress scavenging. For nine genes, the data were validated by qPCR analysis in both roots and shoots. Taken together, these results show that salt-adapted Pokkali rice varieties are powerful sources for the identification of novel endophytes, which can be used to confer salinity tolerance to agriculturally important, but salt-sensitive rice varieties.

The efficiency with which plants use nutrients to create biomass and/or grain is determined by the interaction of environmental and plant intrinsic factors. The major macronutrients, especially nitrogen (N), limit plant growth and development (1.5-2% of dry biomass) and have a direct impact on global food supply, fertilizer demand, and concern with environmental health. In the present time, the global consumption of N fertilizer is nearly 120 MT (million tons), and the N efficiency ranges from 25 to 50% of applied N. The dynamic range of ideal internal N concentrations is extremely large, necessitating stringent management to ensure that its requirements are met across various categories of developmental and environmental situations. Furthermore, approximately 60 percent of arable land is mineral deficient and/or mineral toxic around the world. The use of chemical fertilizers adds to the cost of production for the farmers and also increases environmental pollution. Therefore, the present study focused on the advancement in fertilizer approaches, comprising the use of biochar, zeolite, and customized nano and bio-fertilizers which had shown to be effective in improving nitrogen use efficiency (NUE) with lower soil degradation. Consequently, adopting precision farming, crop modeling, and the use of remote sensing technologies such as chlorophyll meters, leaf color charts, etc. assist in reducing the application of N fertilizer. This study also discussed the role of crucial plant attributes such as root structure architecture in improving the uptake and transport of N efficiency. The crosstalk of N with other soil nutrients plays a crucial role in nutrient homeostasis, which is also discussed thoroughly in this analysis. At the end, this review highlights the more efficient and accurate molecular strategies and techniques such as N transporters, transgenes, and omics, which are opening up intriguing possibilities for the detailed investigation of the molecular components that contribute to nitrogen utilization efficiency, thus expanding our knowledge of plant nutrition for future global food security.

The volatile flavour composition of cultivated mushroom species, Agaricus bisporus, Pleurotus florida and Calocybe indica of India was analysed by capillary GC following isolation by simultaneous distillation and solvent extraction (SDE) at reduced pressure. About 25 flavour components were identified and their variation in the three species is highlighted. The most abundant compound was 1-octen-3-ol and its concentration was highest in P. florida. The other important components were n-octanol, 3-octanol, 3-octanone, 2-octen-1-ol, n-pentanal, n-pentanol, 1-hexanol, benzyl alcohol, 2-octenal and n-octanal. Copyright © 1999 John Wiley & Sons, Ltd.

This study was undertaken to assess if the root-associated native bacterial endophytes in tomato have any bearing in governing the host resistance to the wilt pathogen Ralstonia solanacearum. Internal colonization of roots by bacterial endophytes was confirmed through confocal imaging after SYTO-9 staining. Endophytes were isolated from surface-sterilized roots of 4-weeks-old seedlings of known wilt resistant (R) tomato cultivar Arka Abha and susceptible (S) cv. Arka Vikas on nutrient agar after plating the tissue homogenate. Arka Abha displayed more diversity with nine distinct organisms while Arka Vikas showed five species with two common organisms (Pseudomonas oleovorans and Agrobacterium tumefaciens). Screening for general indicators of biocontrol potential showed more isolates from Arka Abha positive for siderophore, HCN and antibiotic biosynthesis than from Arka Vikas. Direct challenge against the pathogen indicated strong antagonism by three Arka Abha isolates (P. oleovorans, Pantoea ananatis, and Enterobacter cloacae) and moderate activity by three others, while just one isolate from Arka Vikas (P. oleovorans) showed strong antagonism. Validation for the presence of bacterial endophytes on three R cultivars (Arka Alok, Arka Ananya, Arka Samrat) showed 8-9 antagonistic bacteria in them in comparison with four species in the three S cultivars (Arka Ashish, Arka Meghali, Arka Saurabhav). Altogether 34 isolates belonging to five classes, 16 genera and 27 species with 23 of them exhibiting pathogen antagonism were isolated from the four R cultivars against 17 isolates under three classes, seven genera and 13 species from the four S cultivars with eight isolates displaying antagonistic effects. The prevalence of higher endophytic bacterial diversity and more antagonistic organisms associated with the seedling roots of resistant cultivars over susceptible genotypes suggest a possible role by the root-associated endophytes in natural defense against the pathogen.

Effect of pre-treatments of 1 and 5 μM epibrassinolide or homobrassinolide prior to water stress induction on changes in root nodulation and contents of endogenous abscisic acid (ABA) and cytokinin trans-zeatin riboside (ZR), and nitrogenase activity was investigated in the nodulated roots of Phaseolus vulgaris L. cv. Arka Suvidha. Brassinosteroids in the unstressed plants increased root nodulation, ZR content and nitrogenase activity, and also ameliorated their stress-induced decline in the nodulated roots. The ABA contents in the nodules of control or stressed plants were not altered by brassinosteroids treatment. There was an increase in pod yield by brassinosteroids treatment (5 μM) in the irrigated control as well as stressed plants without influencing pod number or pod length. Among the brassinosteroids, epibrassinolide was relatively more effective.

Late blight, caused by Phytophthora infestans , has emerged as the most destructive disease of potato and tomato in South India since 2008. One hundred and fifty‐seven isolates of Phytophthora infestans , 63 from potato and 94 from tomato, were collected from major potato and tomato production areas of South India between 2010 and 2012. Their phenotypic and genotypic characteristics were determined and compared with reference isolates. Isolates were characterized based on mating type, in vitro metalaxyl sensitivity, mitochondrial DNA haplotype, RG 57 DNA fingerprinting patterns, SSR markers and aggressiveness on potato and tomato, in order to monitor population changes in P. infestans . All isolates were A2 mating type, metalaxyl resistant, mt DNA haplotype Ia and had RG 57 and SSR fingerprints almost identical to the 13_A2 clonal lineage reported in Europe. Variation at the D13 and SSR 4 loci allowed discrimination of minor variants, designated as 13_A2_3, 13_A2_3b, 13_A2_3c and 13_A2_1. A comparison of the lesion diameters caused by 157 isolates on detached leaflets of three potato and tomato cultivars showed all isolates to be equally aggressive, confirming that the same clonal population is infecting both hosts. This study demonstrates that the 13_A2 lineage was responsible for severe late blight outbreaks on potato and tomato in South India and has replaced the prior population represented by the US ‐1 and other genotypes. Revised management strategies will be required to combat this destructive 13_A2 clonal lineage and monitoring of the population across other potato‐ and tomato‐growing regions of India is warranted.

Chitosan loaded with various metal ions such as Ag+, Cu2+, Zn2+, Mn2+ and Fe2+ has been reported to exert strong antimicrobial activity. In this study, the silver-nanoparticles (AgNPs) were synthesized at 95°C using chitosan as the reducing agent and stabilizer. The UV-Vis spectrum displayed peak in a range between 415-420 nm, the characteristic surface plasmon resonance band of silver nanoparticles. The size, shape and aggregation properties of the resultant nanoparticles were examined using field emission scanning electron microscopy coupled with energy dispersive X-ray spectroscopy. The measurement results indicated that the chitosan-silver nanoparticle (chitosan-AgNP) composite having the mean hydrodynamic diameter range of 495-616 nm were apparently smooth and the silver nanoparticles with the size distribution was from 10 to 15 nm. Chitosan-AgNP composites had a zeta potential of +50.08 mV to +87.75 mV. In vitro conidial germination assay indicated that chitosan-AgNP composite exhibited significantly higher antifungal activity against Colletotrichum gloeosporioides than its components at their respective concentrations. In vivo assay using detached mango fruit cv. Alphonso showed that anthracnose was significantly inhibited by chitosan-AgNP composite. Therefore, this study suggests that postharvest decay in mango can be minimized by chitosan-AgNP composites and its application on a commercial scale needs to be exploited.   Key words: Chitosan, silver nanoparticle, antifungal activity, mango fruits, Colletotrichum gloeosporioides.

Huanglongbing (HLB) or citrus greening is highly destructive disease that is affecting the citrus industry worldwide and it has killed millions of citrus plants globally. HLB is caused by the phloem limited, Gram negative, non-culturable, alpha-proteobacterium, 'Candidatus Liberibacter asiaticus'. Currently, polymerase chain reaction (PCR) and real time PCR have been the gold standard techniques used for detection of 'Ca. L. asiaticus'. These diagnostic methods are expensive, require well equipped laboratories, not user-friendly and not suitable for on-site detection of the pathogen. In this study, a sensitive, reliable, quick and low cost recombinase polymerase based isothermal amplification combined with lateral flow assay (HLB-RPA-LFA) technique has been developed as a diagnostic tool for detection of 'Ca. L. asiaticus'. The assay was standardized by designing the specific primer pair and probe based on the conserved 16S rRNA gene of 'Ca. L. asiaticus'. The assay was optimized for temperature and reaction time by using purified DNA and crude plant extracts and the best HLB-RPA-LFA was achieved at the isothermal temperature of 38°C for 20 to 30 min. The efficacy and sensitivity of the assay was carried out by using field grown, HLB-infected, HLB-doubtful and healthy citrus cultivars including mandarin, sweet orange cv. mosambi, and acid lime. The HLB-RPA-LFA did not show cross-reactivity with other citrus pathogens and is simple, cost-effective, rapid, user-friendly and sensitive. Thus, the HLB-RPA-LFA method has great potential to provide an improved diagnostic tool for detection of 'Ca. L. asiaticus' for the farmers, nurserymen, disease surveyors, mobile plant pathology laboratories, bud-wood certification and quarantine programs.

BACKGROUND: Wide germplasm diversity and transferability of antioxidant parameters is the primary requirement for the development of high-antioxidant tomato cultivars. The present study was conducted to screen tomato genotypes including hybrids, varieties, cherry tomatoes, wild species, elite germplasm lines, interspecific hybrids and backcross populations for antioxidant activity and other quality parameters to select high-antioxidant lines with good total soluble solids (TSS) for further usage in crop improvement programmes. RESULTS: Wild species and interspecific hybrids between LA-1777 (Solanum habrochaites) and an elite genotype 15SBSB recorded very high antioxidant capacity (FRAP), DPPH radical-scavenging ability, and high phenols and flavonoids. Interspecific hybrids also recorded very high total soluble solids (TSS). Significantly higher total carotenoids, lycopene and vitamin C were observed in IIHR-249-1 with moderately higher TSS. Cherry tomato lines IIHR-2866, 2865 and 2864 recorded four to five times more β-carotene than commercial hybrids/varieties. CONCLUSION: Tomato line IIHR-249-1 can be used for improving antioxidant capacity, total carotenoids and lycopene in tomato breeding programmes. Cherry tomato lines IIHR-2866, 2865 and 2864 can be used for improving β-carotene content. LA-1777 and interspecific hybrids could be used for developing tomato lines rich in antioxidants as well as TSS.

The invasion of the Western Hemisphere native fall armyworm (Spodoptera frugiperda; J. E. Smith) (Lepidoptera: Noctuidae) into the Eastern Hemisphere has been notable for the rapidity and geographical breadth of new detections. In the year following the first discovery in western sub-Saharan Africa in 2016, infestations have been documented in most sub-Saharan maize growing regions and has now expanded beyond Africa with populations recently reported in India. These observations could indicate a remarkable capacity for rapid establishment and long-distance dissemination. However, while fall armyworm does exhibit extended migration in North America where it annually traverses thousands of kilometers, this behavior is known to be dependent on highly favorable wind patterns and so can't be assumed to occur in all locations. An alternative possibility is that the species has long been present in Africa, and perhaps the rest of the hemisphere, but was undetected until the enhanced monitoring that resulted after its initial discovery. Determining whether the fall armyworm in the Eastern Hemisphere is newly arrived or long pre-existing is important for assessing the risks of significant economic impacts, as the former indicates a change in pest composition while the latter does not. This study examined this issue by comparing collections from two geographically distant locations, South Africa and India. Sequence comparisons were used to quantify differences between the South Africa and India collections, assess the likelihood of their sharing a common source population, and their possible relationship with previously characterized fall armyworm from other regions of Africa. The results indicate genetic homogeneity between the South African and Indian fall armyworm populations tested and substantial similarities between these and collections from eastern Africa. The implications of these findings on fall armyworm population behavior and composition are discussed.