MARE - Centro de Ciências do Mar e do Ambiente

The population structure of the blue jack mackerel (Trachurus picturatus, Osteichthyes, Carangi-dae), in the northeast Atlantic is still unknown. To identify any distinct population units, three areas were selected: waters off Madeira, Peniche (mainland Portugal), and the Canary Islands. Knowledge of population structure is an aspect of the population dynamics of a species that is essential to effectively assess the existence of stocks and manage fisheries. In this study, geometric morphometrics and otolith shape analysis were successfully applied for population identification. Multivariate analysis of variance (MANOVA) revealed no body shape differences between males and females in each area studied, and therefore the sexes were combined for the analysis. The results of the discriminant analysis showed that a low misclassification occurred among areas; 78.0% of individuals were correctly classified. MANOVA performed on the otolith normalized elliptic Fourier descriptors revealed significant areal differences, but no difference between sexes. An overall classification success of 73.3% in the canonical discriminant analysis was achieved. These results indicate the usefulness of both otolith and body shape analysis for differentiation of blue jack mackerel stocks from the northeast Atlantic and indicate the existence of at least three distinguishable populations of this species.

O)] (8) were further evaluated and their mechanism of action was determined to be apoptosis, evidenced by AnnexinV staining and the increase in caspase 3/7 activity. Compounds 3, 7 and 8 also exhibit DNA cleavage activity, involving the formation of reactive oxygen species and were able to induce genomic damage in cells as determined by COMET assay.

Abstract Sustainability is a universal goal that requires balancing social, economic and environmental dimensions, and that applies to both terrestrial and marine environments. Several authors argue that arts are valuable tools to frame and engage with current environmental issues related to sustainability, including pollution, climate change and biodiversity loss. Accordingly, our research question is: What is the role of art in the sustainability of coasts and seas? We searched our research question on the two most important scientific databases of articles (Scopus and Web of Science) and retrieved 1,352 articles. We narrowed the articles to 79 studies that actually address our question through screening. The dataset describes a variety of artworks from the four art categories (literary, media, performing and visual) around the world, although the more frequent countries are the US, the UK and Australia. We found that visual arts are more common (~40%), and engagement is a highlighted pursued impact (~40%) by these artistic practices. Other authors also intend to promote marine conservation and restoration, management, education and activism. Only 19 articles of the dataset measured the impact of artistic activities on their audience. This subset shows evidence of art contributions to sustainability mainly through raising awareness, learning, and promoting engagement and enjoyment of project participants. Through this work, we set the current state of knowledge on this emerging topic, and argue that further research and new strategies of impact measurement are needed to thoroughly understand the effect of art on coastal/marine sustainability.

Abstract Limpets are one of the most successful intertidal algal grazers in the north‐eastern Atlantic. They provide valuable ecosystem services, playing a pivotal role in maintaining rocky shore ecological balance and have an important economic value, being subject to high levels of exploitation in several oceanic archipelagos. Limpets represent one of the most profitable economic activities of small‐scale fisheries in the Madeira archipelago. However, limpets are extremely vulnerable to anthropogenic impacts, such as overharvesting, habitat fragmentation, and pollution. The protection effects and the effectiveness of marine protected areas (MPAs) on the population dynamics of two historically highly exploited limpet species, Patella aspera and Patella candei , were analysed through a comparative study of size, reproduction, and biomass in the Madeira archipelago. The effects of protection from MPAs on limpet populations resulted in a differential increase on size at first maturity, shell size, and capture per unit effort according to the degree of protection. Old and enforced MPAs showed the best‐preserved limpet populations in the study area, and both variables (age and enforcement) best explained the observed variability among the MPAs studied. A thorough and multidisciplinary study is necessary to obtain a reliable picture of commercial stocks of the two targeted species ( P. aspera and P. candei ). Genetic analysis and studies on the food source of limpets may shed light to develop integrative conservation strategies.

A global genome database of all of Earth's species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ~1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 34 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects.

Abstract: According to the enemy release hypothesis (ERH) the spread of invasive species will be facilitated by release from their enemies as they occupy new areas. However, the ERH has rarely been tested by comparing populations of native (non-invasive, long established) species with expanding or shifting ranges, to the same species as invasive in another area. We tested the ERH with respect to blood parasite levels (prevalence and intensity of Plasmodium spp. and Haemoproteus spp.) of (a) two closely related, widely distributed species of thrush (Turdus leucomelas and T. merula), and (b) an invasive sparrow (Passer domesticus) whose range has expanded from the Old World to the New World since the 18th century. A total of 158 birds were sampled in Portugal and 99 in Brazil. All bird species were parasitized, and 55% of the individuals collected were parasitized, and the mean intensity of infection was of 28 parasites per 10,000 erythrocytes. We assessed whether differences in levels of infection (prevalence and intensity) were due to site (tropical/New World and temperate/Old World) or host species. The ERH was supported: Passer domesticus and Turdus merula had higher levels of parasitism in the Old World than in the New World. Thus, P. domesticus seems to be benefitting from its "recent" range expansion, compared to T. leucomelas, through ecological release from its native parasites and because the parasites of the recently invaded area seem to be infesting native species instead.

What consumers choose when purchasing food is of most importance to promote sustainability. The consumption of more sustainable foods should be stimulated, for example, by using more sustainable ingredients and by consumer education. Therefore, an innovative and highly nutritious vegan burger with seaweed (VBS) was developed using sustainable ingredients, such as pulses—grass pea (Lathyrus sativus L.) and chickpea (Cicer arietinum L.)—and the seaweed Dulse (Palmaria palmata L.) from aquaculture. VBS was analysed for its physico-chemical and nutritional characteristics, including antioxidant activity (DPPH, TPC) and fatty acid and mineral element profiles. Shelf life and consumer acceptability were determined. The VBS was shown to be a source of protein (8.01 ± 0.14% fresh weight (FW)), fibre (5.75% FW), and mineral elements, such as P, Fe, rich in Mg, Mn, and Cu, while having low sodium content. Moreover, it presents a low sugar content. Furthermore, no antioxidant activity was detected. The pasteurised and vacuum-packed product had a shelf life of 90 days and was well accepted by consumers (64.0% acceptance). It may be concluded that an innovative VBS, nutritionally rich and with a shelf life of 90 days, was developed and well accepted by consumers, which is a good addition to a rich and diverse diet.

Abstract Topshells play a pivotal role in intertidal rocky ecosystems and are adapted to harsh thermal and hydric stress. Phorcus sauciatus , a common grazer in the Macaronesian region (Madeira and the Canaries), has rarely been studied due to its restricted geographic distribution compared with Phorcus lineatus . Monthly samples were taken throughout 2017 to analyse biological parameters and evaluate the harvesting effect on the stocks of this species in Madeira. Individuals of the first age classes (<4 years) were dominant (~89%), while immature individuals were more abundant during the summer season. The spawning season occurs between March and August, especially from March to June. The size at first maturity was 12.95 mm long (1.68 years), with a continuous recruitment pattern throughout the year. Yield-per-recruit analysis (Y/R) showed that maximum production is achieved at a fishing mortality of 1.7 year −1 , corresponding to a Y/R of 0.023 g. Currently, Phorcus sauciatus seems to be moderately exploited in Madeira, but urgent conservation measures, such as a landing obligation, the establishment of a minimum catch size of 15 mm length, and a closed season (February–May), are warranted to preserve stocks of this species in the medium to long term.

Aquatic ecosystems are particularly vulnerable to the introduction of non-indigenous species (NIS), leading to multi-faceted ecological, economic and health impacts worldwide. The Iberian Peninsula comprises an exceptionally biodiverse Mediterranean region with a high number of threatened and endemic aquatic species, most of them strongly impacted by biological invasions. Following a structured approach that combines a systematic review of available information and expert opinion, we provide a comprehensive and updated multi-taxa inventory of aquatic NIS (fungi, macroalgae, vascular plants, invertebrates and vertebrates) in Iberian inland waters. Moreover, we assess overall patterns in the establishment status, introduction pathways, native range and temporal introduction trends of listed NIS. In addition, we discuss the legal coverage provided by both national (Spanish and Portuguese) and European NIS regulations. We inventoried 326 aquatic NIS in Iberian inland waters, including 215 established, 96 with uncertain establishment status and 15 cryptogenic taxa. Invertebrates (54.6%) and vertebrates (24.5%) were the groups with the highest number of NIS, with Arthropoda, Mollusca, and Chordata being the most represented phyla. Recorded NIS originated from diverse geographic regions, with North and South America being the most frequent. Vertebrates and vascular plants were mostly introduced through intentional pathways (i.e. release and escape), whereas invertebrates and macroalgae arrived mostly through unintentional ways (i.e. contaminant or stowaway). Most of the recorded NIS were introduced in Iberian inland waters over the second half of the 20 th century, with a high number of NIS introductions being reported in the 2000s. While only 8% of the recorded NIS appear in the European Union list of Invasive Alien Species of Union concern, around 25% are listed in the Spanish and Portuguese NIS regulations. This study provides the most updated checklist of Iberian aquatic NIS, meeting the requirements set by the EU regulation and providing a baseline for the evaluation of its application. We point out the need for coordinated transnational strategies to properly tackle aquatic invasions across borders of the EU members.

Comber is an important bycatch species in the trawl fishery both in the Mediterranean and the Atlantic. Age and growth studies have been restricted to the eastern Mediterranean and no methodologies were ever applied to ensure accuracy and precision. In this study a total of 471 otoliths from specimens ranging from 12 to 26 cm were used. Precision indices showed a high level of agreement between readers and no evidence of systematic disagreement was obtained. To estimate fish growth and due to the absence of individuals smaller than 12 cm, three approaches were used to estimate the von Bertalanffy growth parameters: whole otolith readings, back calculation and a combination of both methodologies. Akaike’s information criterion suggests that the back calculation approach was the best one for describing comber growth: TL = 25.26 [1−e(−0.21(t+1.72)]. Natural mortality estimates varied between M = 0.44 year−1 and M = 0.48 year−1 while estimates of the fishing mortality varied between 0.12 year−1 and 0.16 year−1 and the exploitation rate between 0.20 and 0.27.

Codium tomentosum hydroethanolic extract was obtained using a pilot solid–liquid extractor to validate the anti-browning functionality of the extract under industrial conditions. Fresh-cut apple slices were coated by immersion in: (1) a seaweed extract solution (0.5% w/v) and (2) a commercial coating, and the two sets of samples were compared with a control (immersion in water). Packaged samples were stored, under ambient and modified atmosphere conditions at 4°C. After 30 days of storage, the samples that were coated with the seaweed extract and packaged under modified atmosphere, demonstrated lower peroxidase activity and polyphenol oxidation when compared with the samples treated with the commercial additive. These results confirm, at pilot scale and under industrial production conditions, the efficacy of the seaweed extract as a bio-based substitute for the synthetic coatings, which are currently used to prevent browning in fresh-cut apples. Novelty impact statement Fresh-cut fruits are subjected to processing operations leading to a decrease in nutritional and organoleptic properties. It is therefore necessary to adopt strategies to delay the degradative processes. In this study, the efficacy of a pilot-scale production and industrial application of a coating formulated with Codium tomentosum seaweed extract has been established for the first time. This seaweed extract possesses the potential to prevent browning development in fresh-cut apples under industrial operating conditions.

Os estuários são corpos de água costeiros que se encontram na zona de confluência do rio com o mar, onde a salinidade se dilui gradualmente mas onde as oscilações ambientais diárias podem variar de forma bastante drástica. São áreas muito produtivas mas onde, por serem de transição entre aqueles ambientes aquáticos, apenas um número restrito de espécies bem adaptadas se consegue apresentar de forma numerosa. São áreas apetecíveis que, pela proteção que proporcionam a quem utiliza o mar como forma de subsistência ou devido às condições únicas de exploração dos produtos de origem marinha, têm levado as populações humanas a aí se fixarem. Como consequência, estas áreas apresentam atualmente dos maiores índices de pressão antropogénica de que há registo, tornando-as vulneráveis e com uma necessidade urgente de intervenção e implementação de medidas de conservação de espécies e do habitat.

Maritime trade and transportation of hazardous and noxious substances (HNS) have been increasing in European waters, augmenting the risk of accidental spills from ships or in harbours. Despite their reported toxicity and hazardousness, information on HNS levels in the aquatic environment is still lacking. Therefore, an assessment combining a chemical and a multi-biomarker evaluation on HNS contamination was done in NW Iberian estuaries of Rivers Minho, Lima and Douro using Platichthys flesus (flounder). Of the twenty-five HNS measured, fifteen were found in flounder liver and muscle, and a few in sediments, though at generally low levels. Principal component analysis produced a clear distinction among sites, with Douro River estuary arising as the most impacted. Oxidised proteins and antioxidant enzymes (superoxide dismutase, catalase, glutathione peroxidase) were the biomarkers contributing to site discrimination. Correlations between biomarkers and HNS levels provided important baseline information for the study area and potential biological effects of HNS on this sentinel species.

Abstract Streamflow is considered a driver of interspecific and intraspecific life‐history differences among freshwater fish. Therefore, dams and related flow regulation can have deleterious impacts on their life cycles. The main objective of this study was to assess existing differences in the growth and reproduction patterns of a non‐migratory fish species (the Northern Iberian chub, Squalius carolitertii , Doadrio, 1988), between nonregulated and regulated watercourses. For 1 year, samples were collected from two populations of Iberian chub, inhabiting rivers with nonregulated and regulated flow regimes. Flow regulation for water storage promoted changes in chub's condition, duration of spawning, fecundity, and oocyte size. However, this non‐migratory species was less responsive to streamflow regulation than other native potamodromous species. Findings from this study are important to understand changes imposed by regulated rivers and can be used to support the implementation of suitable river management practices.

Several experimental surveys were carried out in the Northeastern Atlantic, Madeira archipelago from 1991 to 2008 to explore new fisheries resources. This study examined the selectivity of bottom and floating traps and the analysis of yield-per-recruit (YPR) and biomass-per-recruit (BPR) providing helpful insight to the management of the shrimp Plesionika narval. A total of 28,262 specimens were sampled and the analysis of length at first capture returned higher values when using floating traps indicating that these traps are more selective, exerting less pressure on the resource. The YPR and BPR analysis showed that the stock is under exploited for the studied area and suggests that the use of floating traps in the commercial fisheries of P. narval is recommended, which will allow a higher maximum allowable limit of exploitation and greater yield. The results suggest that P. narval has the potential to support a viable and sustainable fishery using floating traps.

Abstract Harvesting of intertidal grazers such as topshells is known to affect negatively the exploited populations by altering population structure and decreasing abundance. Phorcus sauciatus has a wide geographic distribution in the North‐eastern Atlantic Ocean and is subject to increasing levels of harvesting pressure due to the expansion of human population on coastal areas. The effect of proximity to human settlements and coastal accessibility on the size structure and abundance of P. sauciatus populations was examined in Madeira archipelago. Mean size, proportion of reproductive individuals, and abundance of this species were generally smaller in areas closer to human settlements and in more accessible coastal areas. Marine protected areas returned the highest mean sizes evidencing their effectiveness in preserving the size structure of this species. The results highlight the necessity to regulate the harvest of P. sauciatus in Madeira archipelago, as well as the implementation of management measures aiming at the sustainable exploitation and conservation of this species, exploited in this region since the early 15th century.

RESUMO Este artigo tem por objetivo revisar o Princípio de Precaução no ordenamento nacional ante os acordos internacionais assumidos pelo Brasil. Optamos por uma abordagem constitucional na fase introdutória, pois Princípio de Precaução, que emerge do artigo 225 da Constituição Federal, é considerado como Princípio Geral do Direito Ambiental. O artigo está dividido em três itens. No primeiro deles, como introdução, sugerimos um panorama da sua inserção no direito ambiental brasileiro a partir das convenções internacionais. O segundo item refere-se à sua incorporação pela a doutrina jurídica brasileira. No terceiro, apresentamos alguns exemplos da sua [in]eficácia no contexto nacional. As considerações finais evocam a urgência de uma postura precautória.

Abstract Hydropeaking negatively affects fish assemblages, but knowledge gaps still constrain our ability to rank and mitigate the impacts of different hydropower operation regimes at particular power plants. This is especially relevant for species and rivers for which the effects of hydropeaking are less investigated, such as the Iberian Cypriniformes and Mediterranean rivers. Recognizing the potential of the hydropeaking tool method (HT) developed for salmonids to systematically assess hydropeaking impacts, we adapted it for Iberian Cypriniformes. The general tool framework developed for the salmonids was kept for the Cypriniformes, with the combined use of factors describing the hydromorphological effects and factors related with fish vulnerability to assess hydropeaking impact. Effect and vulnerability factors were developed for Iberian cyprinids and leuciscids establishing preliminary thresholds for each indicator with three different levels of hydropeaking impact on the targeted taxa. The proposed factors and thresholds were critically reviewed and ranked by experts on Iberian Cypriniformes ecology and Mediterranean rivers functioning. Overall, the timing and distribution of peaking events were ranked higher by the experts in the effect factors, whereas the population size of barbel and smaller native Cypriniformes, as well as the degree of limitations in recruitment, were ranked higher in the vulnerability factors. Although there was some divergence in the expert opinions, a final set of effect and vulnerability factors was established, that retained most of the ones proposed for the salmonids, but included new ones, particularly for vulnerability. The present study provided a comprehensive, straightforward, and systematic assessment tool for evaluating hydropeaking impacts on Iberian Cypriniformes.

Contamination derived from maritime transportation is not only linked to petroleum-based substances but also to transportation of other substances such as hazardous and noxious nature (HNS). Over the last decade, the maritime trade of HNS has been augmenting. However, levels of HNS in aquatic environment are still quite unknown. So, an integrative study, combining a chemical and a multi-biomarker evaluation, was done in the NW Atlantic Iberian coast where specimens of Mytilus sp. were collected. Ten HNS were found in the digestive gland of mussels from Vila Chã and Foz, though at generally low levels. Only measurable levels of benzene, trichloroethylene and 1,1,2-trichlorethane were found in other locations. Principal component analysis produced a clear distinction between Vila Chã and Foz and the remaining sampling sites. Biomarkers associated to contamination were the levels of lipid peroxidation (LPO) and activity of glutathione reductase (GR), superoxide dismutase (SOD) and glutathione peroxidase (GPx) enzymes. Correlations between biomarkers and HNS levels highlight the importance of performing biomonitoring campaigns integrating chemical analysis and a biomarker approach to accurately assess the environmental state of aquatic environments.

Abstract Hermaphroditism is thought to be an advantageous strategy common in marine molluscs that exhibit simultaneous, sequential or alternating hermaphroditism. Several species of patellid limpets have previously been shown to be protandrous hermaphrodites. The present study aimed to confirm whether this phenomenon occurs in Patella piperata . Transitional forms of simultaneous protandrous hermaphroditism were found in intermediate size classes of P. piperata , in Madeira (North-eastern Atlantic). Sequential hermaphroditism was confirmed after histological analysis. The overall sex-ratio was biased towards females but approached similar proportions in the larger size classes. Analysis of size at sex change showed that at a shell length of 36 mm 50% of the population probably have changed sex. The results reported confirm the occurrence of sequential hermaphroditism. These findings are of utmost importance to the understanding of the reproductive biology of this species with direct effect on management and conservation of this traditionally harvested limpet.