Museum and Institute of Zoology

Declines in European bird populations are reported for decades but the direct effect of major anthropogenic pressures on such declines remains unquantified. Causal relationships between pressures and bird population responses are difficult to identify as pressures interact at different spatial scales and responses vary among species. Here, we uncover direct relationships between population time-series of 170 common bird species, monitored at more than 20,000 sites in 28 European countries, over 37 y, and four widespread anthropogenic pressures: agricultural intensification, change in forest cover, urbanisation and temperature change over the last decades. We quantify the influence of each pressure on population time-series and its importance relative to other pressures, and we identify traits of most affected species. We find that agricultural intensification, in particular pesticides and fertiliser use, is the main pressure for most bird population declines, especially for invertebrate feeders. Responses to changes in forest cover, urbanisation and temperature are more species-specific. Specifically, forest cover is associated with a positive effect and growing urbanisation with a negative effect on population dynamics, while temperature change has an effect on the dynamics of a large number of bird populations, the magnitude and direction of which depend on species' thermal preferences. Our results not only confirm the pervasive and strong effects of anthropogenic pressures on common breeding birds, but quantify the relative strength of these effects stressing the urgent need for transformative changes in the way of inhabiting the world in European countries, if bird populations shall have a chance of recovering.

Jumping on water is a unique locomotion mode found in semi-aquatic arthropods, such as water striders. To reproduce this feat in a surface tension-dominant jumping robot, we elucidated the hydrodynamics involved and applied them to develop a bio-inspired impulsive mechanism that maximizes momentum transfer to water. We found that water striders rotate the curved tips of their legs inward at a relatively low descending velocity with a force just below that required to break the water surface (144 millinewtons/meter). We built a 68-milligram at-scale jumping robotic insect and verified that it jumps on water with maximum momentum transfer. The results suggest an understanding of the hydrodynamic phenomena used by semi-aquatic arthropods during water jumping and prescribe a method for reproducing these capabilities in artificial systems.

Abstract Logging to “salvage” economic returns from forests affected by natural disturbances has become increasingly prevalent globally. Despite potential negative effects on biodiversity, salvage logging is often conducted, even in areas otherwise excluded from logging and reserved for nature conservation, inter alia because strategic priorities for post‐disturbance management are widely lacking. A review of the existing literature revealed that most studies investigating the effects of salvage logging on biodiversity have been conducted less than 5 years following natural disturbances, and focused on non‐saproxylic organisms. A meta‐analysis across 24 species groups revealed that salvage logging significantly decreases numbers of species of eight taxonomic groups. Richness of dead wood dependent taxa (i.e. saproxylic organisms) decreased more strongly than richness of non‐saproxylic taxa. In contrast, taxonomic groups typically associated with open habitats increased in the number of species after salvage logging. By analysing 134 original species abundance matrices, we demonstrate that salvage logging significantly alters community composition in 7 of 17 species groups, particularly affecting saproxylic assemblages. Synthesis and applications . Our results suggest that salvage logging is not consistent with the management objectives of protected areas. Substantial changes, such as the retention of dead wood in naturally disturbed forests, are needed to support biodiversity. Future research should investigate the amount and spatio‐temporal distribution of retained dead wood needed to maintain all components of biodiversity.

The variability of bee communities along an urban gradient has a potentially strong impact on pollinator-plant interactions. We investigated changes in bee species richness and community composition in the city centre and suburbs of Poznań, Poland. During 2006–2008 we recorded 2,495 individuals from 104 species. The most abundant species was Andrena haemmorhoa. Other abundant species were Bombus pascuorum, Andrena vaga, Andrena nitida, Bombus terrestris. Several species appeared to be more abundant in the city centre whereas others showed an opposite tendency. We have found that the urbanized landscape can act as a filter for the bee community since some specific ecological traits facilitate colonization of the city centre. Small-bodied species that start their activity later in the season and are not solitary preferred the city centre. However, bee species diversity and richness remained stable across the urban gradient indicating some advantages of being a city dwelling bee. We suggest that a city can be a very important habitat for a diverse bee fauna and that conservation of a wide range of habitats of different urbanization levels seems to be the most suitable strategy for conservation of bee diversity in cities.

Fauna Europaea is Europe's main zoological taxonomic index, making the scientific names and distributions of all living, currently known, multicellular, European land and freshwater animals species integrally available in one authoritative database. Fauna Europaea covers about 260,000 taxon names, including 145,000 accepted (sub)species, assembled by a large network of (>400) leading specialists, using advanced electronic tools for data collations with data quality assured through sophisticated validation routines. Fauna Europaea started in 2000 as an EC funded FP5 project and provides a unique taxonomic reference for many user-groups such as scientists, governments, industries, nature conservation communities and educational programs. Fauna Europaea was formally accepted as an INSPIRE standard for Europe, as part of the European Taxonomic Backbone established in PESI. Fauna Europaea provides a public web portal at faunaeur.org with links to other key biodiversity services, is installed as a taxonomic backbone in wide range of biodiversity services and actively contributes to biodiversity informatics innovations in various initiatives and EC programs.

High-throughput genotyping technologies developed for model species can potentially increase the resolution of demographic history and ancestry in wild relatives. We use a SNP genotyping microarray developed for the domestic dog to assay variation in over 48K loci in wolf-like species worldwide. Despite the high mobility of these large carnivores, we find distinct hierarchical population units within gray wolves and coyotes that correspond with geographic and ecologic differences among populations. Further, we test controversial theories about the ancestry of the Great Lakes wolf and red wolf using an analysis of haplotype blocks across all 38 canid autosomes. We find that these enigmatic canids are highly admixed varieties derived from gray wolves and coyotes, respectively. This divergent genomic history suggests that they do not have a shared recent ancestry as proposed by previous researchers. Interspecific hybridization, as well as the process of evolutionary divergence, may be responsible for the observed phenotypic distinction of both forms. Such admixture complicates decisions regarding endangered species restoration and protection.

The widespread use of artificial nestboxes has led to significant advances in our knowledge of the ecology, behaviour and physiology of cavity nesting birds, especially small passerines. Nestboxes have made it easier to perform routine monitoring and experimental manipulation of eggs or nestlings, and also repeatedly to capture, identify and manipulate the parents. However, when comparing results across study sites the use of nestboxes may also introduce a potentially significant confounding variable in the form of differences in nestbox design amongst studies, such as their physical dimensions, placement height, and the way in which they are constructed and maintained. However, the use of nestboxes may also introduce an unconsidered and potentially significant confounding variable due to differences in nestbox design amongst studies, such as their physical dimensions, placement height, and the way in which they are constructed and maintained. Here we review to what extent the characteristics of artificial nestboxes (e.g. size, shape, construction material, colour) are documented in the ‘methods’ sections of publications involving hole-nesting passerine birds using natural or excavated cavities or artificial nestboxes for reproduction and roosting. Despite explicit previous recommendations that authors describe in detail the characteristics of the nestboxes used, we found that the description of nestbox characteristics in most recent publications remains poor and insufficient. We therefore list the types of descriptive data that should be included in the methods sections of relevant manuscripts and justify this by discussing how variation in nestbox characteristics can affect or confound conclusions from nestbox studies. We also propose several recommendations to improve the reliability and usefulness of research based on long-term studies of any secondary hole-nesting species using artificial nestboxes for breeding or roosting.

Following recent advances in the morphological interpretations of the tegmen basal cell margins in the Paraneoptera, a standardized and homology-driven groundplan terminology for tegmina types, structures and vein patterns in Hemiptera Fulgoromorpha, including fossils, is proposed. Each term is listed with a morphological definition, compared and linked to the main systems of planthopper forewing description that have been reviewed. The importance of a standardized and homology-driven terminology is stressed to enhance the quality of data in taxonomic descriptions and to strengthen phylogenetic morphological analysis results. When the interpretation of the origin of vein branches is render difficult, a three-step strategy for pattern recognition of the vein is proposed based on two principles: (1) vein forks are more informative than topology of the vein branches: a search for homologous areas, the nodal cells in particular, must first guide the recognition rather the number of branches of a vein, and (2) minimum of ad hoc evolutionary events should be invoked in the understanding of a modified vein pattern. Examples of some conflicting interpretations of venation patterns in planthoppers are discussed within different families for both extant and extinct taxa. For the first time, the concept of brachypterism is defined in a non-relative way independently from other structures, and the new one of hyperpterism is proposed; a reporting system is proposed for each of them.

Global climate change is a major threat to biodiversity. Large-scale analyses have generally focused on the impacts of climate change on the geographic ranges of species and on phenology, the timing of ecological phenomena. We used long-term monitoring of the abundance of breeding birds across Europe and the United States to produce, for both regions, composite population indices for two groups of species: those for which climate suitability has been either improving or declining since 1980. The ratio of these composite indices, the climate impact indicator (CII), reflects the divergent fates of species favored or disadvantaged by climate change. The trend in CII is positive and similar in the two regions. On both continents, interspecific and spatial variation in population abundance trends are well predicted by climate suitability trends.

We explore population trends of widespread and common woodland birds using data from an extensive European network of ornithologists for the period 1980–2003. We show considerable differences exist in the European trends of species according to the broad habitat they occupy and the degree to which they specialize in habitat use. On average, common forest birds are in shallow decline at a European scale; common forest birds declined by 13%, and common forest specialists by 18%, from 1980 to 2003. In comparison, populations of common specialists of farmland have declined moderately, falling on average by 28% from 1980 to 2003. These patterns contrast with that shown by generalist species whose populations have been roughly stable over the same period, their overall index increasing by 3%. There was some evidence of regional variation in the population trends of these common forest species. The most obvious pattern was the greater stability of population trends in Eastern Europe compared with other regions considered. Among common forest birds, long‐distance migrants and residents have on average declined most strongly, whereas short‐distance migrants have been largely stable, or have increased. There was some evidence to suggest that ground‐ or low‐nesting species have declined more strongly on average, as have forest birds with invertebrate diets. Formal analysis of the species trends confirmed the influence of habitat use, habitat specialization and nest‐site; the effects of region and migration strategy were less clear‐cut. There was also evidence to show that year‐to‐year variation in individual species trends at a European scale was influenced by cold winter weather in a small number of species. We recommend that the species trend information provided by the new pan‐European scheme should be used alongside existing mechanisms to review the conservation status of European birds. The analysis also allows us to reappraise the role of common forest bird populations as a potential barometer of wider forest health. The new indicator appears to be a useful indicator of the state of widespread European forest birds and might prove to be a useful surrogate for trends in forest biodiversity and forest health, but more work is likely to be needed to understand the interaction between bird populations and their drivers in forest.

Although the mechanisms controlling gene flow among populations are particularly important for evolutionary processes, they are still poorly understood, especially in the case of large carnivoran mammals with extensive continuous distributions. We studied the question of factors affecting population genetic structure in the grey wolf, Canis lupus, one of the most mobile terrestrial carnivores. We analysed variability in mitochondrial DNA and 14 microsatellite loci for a sample of 643 individuals from 59 localities representing most of the continuous wolf range in Eastern Europe. We tested an array of geographical, historical and ecological factors to check whether they may explain genetic differentiation among local wolf populations. We showed that wolf populations in Eastern Europe displayed nonrandom spatial genetic structure in the absence of obvious physical barriers to movement. Neither topographic barriers nor past fragmentation could explain spatial genetic structure. However, we found that the genetic differentiation among local populations was correlated with climate, habitat types, and wolf diet composition. This result shows that ecological processes may strongly influence the amount of gene flow among populations. We suggest natal-habitat-biased dispersal as an underlying mechanism linking population ecology with population genetic structure.

BACKGROUND: The dramatic mass mortalities amongst hibernating bats in Northeastern America caused by "white nose-syndrome" (WNS) continue to threaten populations of different bat species. The cold-loving fungus, Geomyces destructans, is the most likely causative agent leading to extensive destruction of the skin, particularly the wing membranes. Recent investigations in Europe confirmed the presence of the fungus G. destructans without associated mass mortality in hibernating bats in six countries but its distribution remains poorly known. METHODOLOGY/PRINCIPAL FINDINGS: We collected data on the presence of bats with white fungal growth in 12 countries in Europe between 2003 and 2010 and conducted morphological and genetic analysis to confirm the identity of the fungus as Geomyces destructans. Our results demonstrate the presence of the fungus in eight countries spanning over 2000 km from West to East and provide compelling photographic evidence for its presence in another four countries including Romania, and Turkey. Furthermore, matching prevalence data of a hibernaculum monitored over two consecutive years with data from across Europe show that the temporal occurrence of the fungus, which first becomes visible around February, peaks in March but can still be seen in some torpid bats in May or June, is strikingly similar throughout Europe. Finally, we isolated and cultured G. destructans from a cave wall adjacent to a bat with fungal growth. CONCLUSIONS/SIGNIFICANCE: G. destructans is widely found over large areas of the European continent without associated mass mortalities in bats, suggesting that the fungus is native to Europe. The characterisation of the temporal variation in G. destructans growth on bats provides reference data for studying the spatio-temporal dynamic of the fungus. Finally, the presence of G. destructans spores on cave walls suggests that hibernacula could act as passive vectors and/or reservoirs for G. destructans and therefore, might play an important role in the transmission process.

Abstract A large‐scale phylogenetic study is presented for C ucujoidea ( C oleoptera), a diverse superfamily of beetles that historically has been taxonomically difficult. This study is the most comprehensive analysis of cucujoid taxa to date, with DNA sequence data sampled from eight genes (four nuclear, four mitochondrial) for 384 coleopteran taxa, including exemplars of 35 (of 37) families and 289 genera of C ucujoidea. Maximum‐likelihood analyses of these data present many significant relationships, some proposed previously and some novel. Tenebrionoidea and L ymexyloidea are recovered together and C leroidea forms the sister group to this clade. Chrysomeloidea and C urculionoidea are recovered as sister taxa and this clade ( P hytophaga) forms the sister group to the core C ucujoidea ( C ucujoidea s.n .). The nitidulid series is recovered as the earliest‐diverging core cucujoid lineage, although the earliest divergences among core C ucujoidea are only weakly supported. The cerylonid series ( CS ) is recovered as monophyletic and is supported as a major C ucujiform clade, sister group to the remaining superfamilies of C ucujiformia. Currently recognized taxa that were not recovered as monophyletic include C ucujoidea, E ndomychidae, C erylonidae and B othrideridae. Biphyllidae and B yturidae were recovered in C leroidea. The remaining C ucujoidea were recovered in two disparate major clades: one comprising the nitidulid series + erotylid series + B oganiidae and H obartiidae + cucujid series, and the other comprising the cerylonid series. Propalticidae are recovered within L aemophloeidae. The cerylonid series includes two major clades, the bothriderid group and the coccinellid group. Akalyptoischiidae are recovered as a separate clade from L atridiidae. Eupsilobiinae are recovered as the sister taxon to C occinellidae. In light of these findings, many formal changes to cucujiform beetle classification are proposed. Biphyllidae and B yturidae are transferred to C leroidea. The cerylonid series is formally recognized as a new superfamily, Coccinelloidea stat.n. Current subfamilies elevated (or re‐elevated) to family status include: M urmidiidae stat.n. , T eredidae stat.n. , E uxestidae stat.n. , A namorphidae stat.rev. , E upsilobiidae stat.n. , and M ycetaeidae stat.n. The following taxa are redefined and characterized: C leroidea s.n. , C ucujoidea s.n. , C erylonidae s.n. , B othrideridae s.n. , E ndomychidae s.n. A new subfamily, C yclotominae stat.n. , is described. Stenotarsinae syn.n. is formally subsumed within a new concept of E ndomychinae s.n.

Egypt, located on the isthmus of Africa, is an ideal region to study historical population dynamics due to its geographic location and documented interactions with ancient civilizations in Africa, Asia and Europe. Particularly, in the first millennium BCE Egypt endured foreign domination leading to growing numbers of foreigners living within its borders possibly contributing genetically to the local population. Here we present 90 mitochondrial genomes as well as genome-wide data sets from three individuals obtained from Egyptian mummies. The samples recovered from Middle Egypt span around 1,300 years of ancient Egyptian history from the New Kingdom to the Roman Period. Our analyses reveal that ancient Egyptians shared more ancestry with Near Easterners than present-day Egyptians, who received additional sub-Saharan admixture in more recent times. This analysis establishes ancient Egyptian mummies as a genetic source to study ancient human history and offers the perspective of deciphering Egypt's past at a genome-wide level.

Abstract The grey wolf ( Canis lupus ) was the first species to give rise to a domestic population, and they remained widespread throughout the last Ice Age when many other large mammal species went extinct. Little is known, however, about the history and possible extinction of past wolf populations or when and where the wolf progenitors of the present-day dog lineage ( Canis familiaris ) lived 1–8 . Here we analysed 72 ancient wolf genomes spanning the last 100,000 years from Europe, Siberia and North America. We found that wolf populations were highly connected throughout the Late Pleistocene, with levels of differentiation an order of magnitude lower than they are today. This population connectivity allowed us to detect natural selection across the time series, including rapid fixation of mutations in the gene IFT88 40,000–30,000 years ago. We show that dogs are overall more closely related to ancient wolves from eastern Eurasia than to those from western Eurasia, suggesting a domestication process in the east. However, we also found that dogs in the Near East and Africa derive up to half of their ancestry from a distinct population related to modern southwest Eurasian wolves, reflecting either an independent domestication process or admixture from local wolves. None of the analysed ancient wolf genomes is a direct match for either of these dog ancestries, meaning that the exact progenitor populations remain to be located.

Effective wildlife management and conservation require reliable assessments of animal abundance. However, no ungulate monitoring methods is entirely satisfying in terms of cost-effectiveness and accuracy. A new method combining unmanned aerial vehicles (drones) and thermal infrared (TIR) imaging may have great potential as a tool for ungulate surveys. Drones enable safe operations at low flying altitudes, and at night – a time that often offers the optimal conditions for wildlife monitoring. To assess the feasibility of the proposed method we used fixed-wing drones with TIR cameras to conduct test surveys in Drawieński National Park, Poland. We demonstrated that ungulate thermal signatures are visible both in leafless deciduous and in pine-dominated coniferous forests. Survey timing highly influenced the results – the best quality thermal images were obtained at sunrise, late evening, and at night. Our preliminary results indicated that thermal surveys from drones are a promising method for ungulate enumeration. We demonstrated that with ground resolution of ~10 cm it is possible to visibly distinguish large species (i.e. red deer) and achieve a good level of area coverage. The main challenges of the method are difficulties in species identification due to relatively low resolution of TIR cameras, regulations limiting drone operations to visual line of sight, and high dependence on weather.

Abstract In this study we explored quantitatively the relationships between the size of bats, the frequencies in their echolocation calls, and the incidence of moths and beetles in their diets. We focused on the predictions of the allotonic frequency hypothesis which states that some insectivorous bats increase their access to moths that can hear echolocation calls by shifting to frequencies to which the ears of these insects are less sensitive. The hypothesis predicts that the frequencies dominating the echolocation calls of bats may be correlated with the incidence of moths in their diets. We collected data for 62 species of bats that take airborne prey, usually flying insects, 25 species of high duty cycle echolocating bats (Rhinolophidae and Hipposideridae) and 37 species that are low duty cycle echolocators (Vespertilionidae and Molossidae). For bats whose echolocation calls are dominated by frequencies < 100 kHz our regression analyses showed a parabolic dependency between moth consumption (% volume or % frequency) and echolocation call frequency (kHz), supporting the allotonic frequency hypothesis. The use of echolocation calls dominated by frequencies outside the range of best hearing by moths may indeed increase the availability of these insects to the bats. However, when the same analysis was performed with only the bat species using echolocation calls dominated by sounds > 100 kHz, the relationship was not statistically significant, suggesting that morphological characteristics rather than echolocation call frequency may limit the range of potential prey items. Our analyses also demonstrate the importance of jaw morphology as a predictor of the incidence of beetles or moths in the diets of bats, and reveal that generally bigger species (as defined by forearm length) use echolocation calls dominated by lower frequencies than smaller species. In both high duty and low duty cycle echolocating bats the relationship between body size and dominant call frequency was best described by a linear model. We also propose that perch hunting was central in the development of the high duty cycle approach to echolocation.

BACKGROUND: While it is generally accepted that patterns of intra-specific genetic differentiation are substantially affected by glacial history, population genetic processes occurring during Pleistocene glaciations are still poorly understood. In this study, we address the question of the genetic consequences of Pleistocene glaciations for European grey wolves. Combining our data with data from published studies, we analysed phylogenetic relationships and geographic distribution of mitochondrial DNA haplotypes for 947 contemporary European wolves. We also compared the contemporary wolf sequences with published sequences of 24 ancient European wolves. RESULTS: We found that haplotypes representing two haplogroups, 1 and 2, overlap geographically, but substantially differ in frequency between populations from south-western and eastern Europe. A comparison between haplotypes from Europe and other continents showed that both haplogroups are spread throughout Eurasia, while only haplogroup 1 occurs in contemporary North American wolves. All ancient wolf samples from western Europe that dated from between 44,000 and 1,200 years B.P. belonged to haplogroup 2, suggesting the long-term predominance of this haplogroup in this region. Moreover, a comparison of current and past frequencies and distributions of the two haplogroups in Europe suggested that haplogroup 2 became outnumbered by haplogroup 1 during the last several thousand years. CONCLUSIONS: Parallel haplogroup replacement, with haplogroup 2 being totally replaced by haplogroup 1, has been reported for North American grey wolves. Taking into account the similarity of diets reported for the late Pleistocene wolves from Europe and North America, the correspondence between these haplogroup frequency changes may suggest that they were associated with ecological changes occurring after the Last Glacial Maximum.

Abstract Diets of the Eurasian badger Meles meles were studied by scat analysis in three localities of eastern and central Poland, representing pristine forests and rural landscapes with little wood cover. In spring, earthworms constituted 82–89% of biomass consumed by badgers in all localities. In summer and autumn, the proportion declined to 56% in the pristine forest, and to 24% in the mosaic of forests, fields, and orchards. Supplementary resources at this time were amphibians (in forests) or garden fruits (in a rural landscape). Literature on badger diet composition in Europe showed that earthworms and vegetable matter were the dominant food types of badgers, but their roles changed with latitude. The share of earthworms grew from nil at 37–40°N to 40–70% at 55–63°N; the opposite trend was observed for vegetable food. Also, of two major supplementary resources, vertebrates were taken by badgers more often at northern latitudes, and insects in the south. In consequence, the food niche of badgers was broadest at 45–55°N and became narrow at both lower and higher latitudes. Moreover, in the temperate zone of Europe, the degree of habitat transformation by humans significantly affected badger feeding habits. In forests, badgers relied predominantly on earthworms (on average, 62% in diets). In farmlands and pastures, earthworms and plant material (usually garden fruit and cereals) played equally important roles (34% each). This biogeographical pattern of feeding habits can be explained by variation in abundance and availability of earthworms.

Two different patterns of wing venation are currently supposed to be present in each of the three orders of Paraneoptera. This is unlikely compared with the situation in other insects where only one pattern exists per order. We propose for all Paraneoptera a new and unique interpretation of wing venation pattern, assuming that the convex cubitus anterior gets fused with the common stem of median and radial veins at or very near to wing base, after separation from concave cubitus posterior, and re-emerges more distally from R + M stem. Thereafter, the vein between concave cubitus posterior and CuA is a specialized crossvein called "cua-cup," proximally concave and distally convex. We show that despite some variations, that is, cua-cup can vary from absent to hypertrophic; CuA can re-emerge together with M or not, or even completely disappear, this new interpretation explains all situations among all fossil and recent paraneopteran lineages. We propose that the characters "CuA fused in a common stem with R and M"and "presence of specialized crossvein cua-cup" are venation apomorphies that support the monophyly of the Paraneoptera. In the light of these characters, we reinterpret several Palaeozoic and early Mesozoic fossils that were ascribed to Paraneoptera, and confirm the attribution of several to this superorder as well as possible attribution of Zygopsocidae (Zygopsocus permianus Tillyard, 1935) as oldest Psocodea. We discuss the situation in extinct Hypoperlida and Miomoptera, suggesting that both orders could well be polyphyletic, with taxa related to Archaeorthoptera, Paraneoptera, or even Holometabola. The Carboniferous Protoprosbolidae is resurrected and retransferred into the Paraneoptera. The genus Lithoscytina is restored. The miomopteran Eodelopterum priscum Schmidt, 1962 is newly revised and considered as a fern pinnule. In addition, the new paraneopteran Bruayaphis oudardi gen. nov. et sp. nov. is described fromthe Upper Carboniferous of France (see Supporting Information).