NOAA National Marine Fisheries Service Southeast Fisheries Science Center

The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes-sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other vertebrates, and only one-third of species are considered safe. Population depletion has occurred throughout the world's ice-free waters, but is particularly prevalent in the Indo-Pacific Biodiversity Triangle and Mediterranean Sea. Improved management of fisheries and trade is urgently needed to avoid extinctions and promote population recovery. DOI: http://dx.doi.org/10.7554/eLife.00590.001.

The study and implementation of no-take marine reserves have increased rapidly over the past decade, providing ample data on the biological effects of reserve protection for a wide range of geographic locations and organisms. The plethora of new studies affords the opportunity to reevaluate previous findings and address formerly unanswered questions with extensive data syntheses. Our results show, on average, positive effects of reserve protection on the biomass, numerical density, species richness, and size of organisms within their boundaries which are remarkably similar to those of past syntheses despite a near doubling of data. New analyses indicate that (1) these results do not appear to be an artifact of reserves being sited in better locations; (2) results do not appear to be driven by displaced fishing effort outside of reserves; (3) contrary to often-made assertions, reserves have similar if not greater positive effects in temperate settings, at least for reef ecosystems; (4) even small reserves can produce significant biological responses irrespective of latitude, although more data are needed to test whether reserve effects scale with reserve size; and (5) effects of reserves vary for different taxonomic groups and for taxa with various characteristics, and not all species increase in response to reserve protection. There is considerable variation in the responses documented across all the reserves in our data set -variability which cannot be entirely explained by which species were studied. We suggest that reserve characteristics and context, particularly the intensity of fishing outside the reserve and inside the reserve before implementation, play key roles in determining the direction and magnitude of the reserve response. However, despite considerable variability, positive responses are far more common than no differences or negative responses, validating the potential for well designed and enforced reserves to serve as globally important conservation and management tools.

Climate change is a pervasive and growing global threat to biodiversity and ecosystems. Here, we present the most up-to-date assessment of climate change impacts on biodiversity, ecosystems, and ecosystem services in the U.S. and implications for natural resource management. We draw from the 4th National Climate Assessment to summarize observed and projected changes to ecosystems and biodiversity, explore linkages to important ecosystem services, and discuss associated challenges and opportunities for natural resource management. We find that species are responding to climate change through changes in morphology and behavior, phenology, and geographic range shifts, and these changes are mediated by plastic and evolutionary responses. Responses by species and populations, combined with direct effects of climate change on ecosystems (including more extreme events), are resulting in widespread changes in productivity, species interactions, vulnerability to biological invasions, and other emergent properties. Collectively, these impacts alter the benefits and services that natural ecosystems can provide to society. Although not all impacts are negative, even positive changes can require costly societal adjustments. Natural resource managers need proactive, flexible adaptation strategies that consider historical and future outlooks to minimize costs over the long term. Many organizations are beginning to explore these approaches, but implementation is not yet prevalent or systematic across the nation.

The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing possibly the first global marine fish extinctions due to overfishing. Consequently, the chondrichthyan extinction rate is potentially 25 extinctions per million species years, comparable to that of terrestrial vertebrates. Overfishing is the universal threat affecting all 391 threatened species and is the sole threat for 67.3% of species and interacts with three other threats for the remaining third: loss and degradation of habitat (31.2% of threatened species), climate change (10.2%), and pollution (6.9%). Species are disproportionately threatened in tropical and subtropical coastal waters. Science-based limits on fishing, effective marine protected areas, and approaches that reduce or eliminate fishing mortality are urgently needed to minimize mortality of threatened species and ensure sustainable catch and trade of others. Immediate action is essential to prevent further extinctions and protect the potential for food security and ecosystem functions provided by this iconic lineage of predators.

Marine reserves have been widely promoted as conservation and fishery management tools. There are robust demonstrations of conservation benefits, but fishery benefits remain controversial. We show that marine reserves in Florida (United States) and St. Lucia have enhanced adjacent fisheries. Within 5 years of creation, a network of five small reserves in St. Lucia increased adjacent catches of artisanal fishers by between 46 and 90%, depending on the type of gear the fishers used. In Florida, reserve zones in the Merritt Island National Wildlife Refuge have supplied increasing numbers of world record-sized fish to adjacent recreational fisheries since the 1970s. Our study confirms theoretical predictions that marine reserves can play a key role in supporting fisheries.

Sharks are marine consumers believed to occupy top positions in marine food webs. But surprisingly, trophic level estimates for these predators are almost non-existent. With the hope of helping better define the ecological role of sharks in marine communities, this paper presents standardized diet compositions and trophic levels calculated for a suite of species. Dietary composition for each species was derived from published quantitative studies using a weighted average index that takes into account sample size in each study. The trophic level (TL) values of the 11 food types used to characterize the diet (obtained from published accounts) were then used to calculate fractional trophic levels for 149 species representing eight orders and 23 families. Sharks as a group are tertiary consumers (TL>4), and significant differences were found among the six orders compared, which were attributable to differences between orectolobiforms (TL<4) and all other orders, and between hexanchiforms and both carcharhiniforms and squatiniforms. Among four families of carcharhiniform sharks, carcharhinids (TL=4.1, n=39) had a significantly higher TL than triakids (TL=3.8, n=19) and scyliorhinids (TL=3.9, n=21), but not sphyrnids (TL=3.9, n=6). When compared to trophic levels for other top predators of marine communities obtained from the literature, mean TL for sharks was significantly higher than for seabirds (n=28), but not for marine mammals (n=97). Trophic level and body size were positively correlated (r s =0.33), with the fit increasing (r s =0.41) when the three predominantly zooplanktivorous sharks were omitted, and especially when considering only carcharhinid sharks (r s =0.55).

The concept of elasmobranch species using nursery areas was introduced in the early 1900s and has been an accepted aspect of shark biology and behavior for several decades. Despite several descriptions of how shark species use nursery areas and what types of regions nurseries may be found in, no explicit definition of what constitutes a shark nursery area has been presented. Here we evaluate the assumptions of the current shark nursery paradigm in light of available data. Based on examination of these assumptions and available methods of quantifying and accurately describing shark nursery areas, a new more quantitative definition of shark nursery areas is proposed. This definition requires 3 criteria to be met for an area to be identified as a nursery: (1) sharks are more commonly encountered in the area than other areas; (2) sharks have a tendency to remain or return for extended periods; and (3) the area or habitat is repeatedly used across years. These criteria make the definition of shark nursery areas more compatible with those for other aquatic species. The improved definition of this concept will provide more valuable information for fisheries managers and shark biologists.

The deployment of electronic data storage tags that are surgically implanted or satellite-linked provides marine researchers with new ways to examine the movements, environmental preferences, and physiology of pelagic vertebrates. We report the results obtained from tagging of Atlantic bluefin tuna with implantable archival and pop-up satellite archival tags. The electronic tagging data provide insights into the seasonal movements and environmental preferences of this species. Bluefin tuna dive to depths of >1000 meters and maintain a warm body temperature. Western-tagged bluefin tuna make trans-Atlantic migrations and they frequent spawning grounds in the Gulf of Mexico and eastern Mediterranean. These data are critical for the future management and conservation of bluefin tuna in the Atlantic.

Over the past 3 decades, the status of sea turtles and the need for their protection to aid population recovery have increasingly captured the interest of government agencies, non-governmental organisations (NGOs) and the general public worldwide. This interest has been matched by increased research attention, focusing on a wide variety of topics relating to sea turtle biology and ecology, together with the interrelations of sea turtles with the physical and natural environments. Although sea turtles have been better studied than most other marine fauna, management actions and their evaluation are often hindered by the lack of data on turtle biology, human-turtle interactions, turtle population status and threats. In an effort to inform effective sea turtle conservation a list of priority research questions was assembled based on the opinions of 35 sea turtle researchers from 13 nations working in fields related to turtle biology and/or conservation. The combined experience of the contributing researchers spanned the globe as well as many relevant disciplines involved in conservation research. An initial list of more than 200 questions gathered from respondents was condensed into 20 metaquestions and classified under 5 categories: reproductive biology, biogeography, population ecology, threats and conservation strategies. © Inter-Research 2010.

A critical link missing from our understanding of the nursery role of specific marine habitats is the evidence of connectivity between juvenile and adult habitats. This paper reviews and evaluates evidence of, and spatial scales for, movements from juvenile to adult habitats and it summarises the methods used to study movements. Examples include many fish families but few invertebrate taxa, and most are species of economic importance for USA and Australia. The types of juvenile habitat range from the entire estuary or shallow open coastal waters to specific habitats within estuaries or coastal waters; in some cases juvenile habitats include habitats not traditionally regarded as nursery areas (e.g. the surf zone). The duration of time spent in juvenile habitats averages 13 mo (range 8 d to 5 yr). The majority of organisms move distances of kilometres to hundreds of kilometres from juvenile to adult habitats, although the scale of movements ranged from metres to thousands of kilometres. Changes in abundance among separate habitats and the progression of size classes among separate habitats are the main methods used to infer movement and habitat connectivity. Spatial partitioning of stages of maturity, natural parasites, and a variety of artificial tagging methods have also been used. The latter will become more useful with continued developments in the miniaturisation of artificial tags. More recent studies have used natural tags (e.g. trace elements and stable isotopes) and these methods show great promise for determining movements from juvenile to adult habitats. Few studies provide good evidence for movement from specific juvenile habitats to adult habitats. Future studies need to focus on this movement to supplement data on density, growth and survival of organisms in putative nursery habitats. Such information will allow management and conservation efforts to focus on those habitats that make the greatest contribution to adult populations.

Abstract Oogenesis in fishes follows a universal plan; yet, due to differences in the synchrony and rate of egg development, spawning frequency varies from daily to once in a lifetime. Some species spawn and feed in separate areas, during different seasons, by storing energy and drawing on it later for reproduction (i.e. capital breeding). Other species spawn using energy acquired locally, throughout a prolonged spawning season, allocating energy directly to reproduction (i.e. income breeding). Capital breeders tend to ovulate all at once and are more likely to be distributed at boreal latitudes. Income breeding allows small fish to overcome allometric constraints on egg production. Income breeders can recover more quickly when good‐feeding conditions are re‐established, which is a benefit to adults regarding bet‐hedging spawning strategies. Many species exhibit mixed capital‐ and income‐breeding patterns. An individual's position along this capital–income continuum may shift with ontogeny or in relation to environmental conditions, so breeding patterns are a conditional reproductive strategy. Poor‐feeding environments can lead to delayed maturation, skipped spawning, fewer spawning events per season or fewer eggs produced per event. In a few cases, variations in feeding environments appear to affect recruitment variability. These flexible processes of energy acquisition and allocation allow females to prioritize their own condition over their propagules' condition at any given spawning opportunity, thereby investing energy cautiously to maximize lifetime reproductive value. These findings have implications for temporal and spatial sampling designs, for measurement and interpretation of fecundity, and for interpreting fishery and ecosystem assessments.

ABSTRACT This study examines life history patterns and correlations between traits related to body size, reproduction, age, and growth in sharks, using data from 230 populations representing 164 species, 19 families, and 7 orders. The analysis focused on interspecific life history variability, but intraspecific and intrapopulation variation were also considered. Interspecifically, body size correlated positively with litter size and offspring size, and a tradeoff between litter size and offspring size was found after factoring out the effects of body size. Offspring size correlated negatively with growth completion rate (K), but the correlation became positive after correcting for the effects of body size. Parental size for males and females was negatively correlated with K. Parental size and size at maturity exhibited a strong positive correlation, with sexual maturity occurring at about 75% of maximum size in both sexes. Males were 10% smaller than females and reached their maximum length 34% faster than females on average. Females tend to mature later and live longer than males, but age at maturity is reached at about 50% of maximum age in both sexes. Maximum size and empirical longevity were not significantly correlated in females, but were positively correlated in males. Size and age at maturity also exhibited a moderate positive correlation in males, especially after excluding data for Squalus acanthias. Principal component and cluster analyses were used to reflect similarities among life history traits of 40 populations from 34 species, and at least three separate life history strategies were identified.

Much recent attention has been focused on juvenile fish and invertebrate habitat use, particularly defining and identifying marine nurseries. The most significant advancement in this area has been the development of a standardized framework for assessing the relative importance of juvenile habitats and classifying the most productive as nurseries. Within this framework, a marine nursery is defined as a juvenile habitat for a particular species that contributes a greater than average number of individuals to the adult population on a per-unit-area basis, as compared to other habitats used by juveniles. While the nursery definition and framework provides a powerful approach to identifying habitats for conservation and restoration efforts, it can omit habitats that have a small per-unit-area contribution to adult populations, but may be essential for sustaining adult populations. Here we build on the nursery concept by developing a framework for evaluating juvenile habitats based on their overall contribution to adult populations, and introduce the concept of Effective Juvenile Habitat (EJH) to refer to habitats that make a greater than average overall contribution to adult populations. Inter-Research 2006.

Interactions between toxic phytoplankton and their zooplankton grazers are complex. Some zooplankters ingest some toxic phytoplankters with no apparent harm, whereas others are deleteriously affected. Phycotoxins vary in their modes of action, levels of toxicity and solubility, and affect grazers in different ways. Beyond effects on direct grazers, toxins may accumulate in and be transferred through marine food webs, affecting consumers at higher trophic levels, including fish, seabirds, and marine mammals. Grazers of toxic phytoplankton include protists as well as metazoans, and the impact of zooplankton grazing on development or termination of toxic blooms is poorly understood. In most interactions of toxic phytoplankters with grazers and other marine food‐web components, outcomes are situation‐specific, and extrapolation of results from one set of circumstances to another may be inappropriate.

We examined the nursery role of salt marshes for transient nekton by searching the literature for data on density, growth, and survival of juvenile fishes and decapod crustaceans in marshes and using meta-analyses to test hypotheses. We analyzed density data from 32 studies conducted throughout the world. Based on fish density, habitat types could be ranked from highest to lowest as: seagrass > vegetated marsh edge, nonvegetated marsh, open water, macroalgae, oyster reefs > vegetated inner marsh. However, patterns of habitat use varied among the 29 fish species represented. For decapod crustaceans (seven species), habitat types were ranked: seagrass > vegetated marsh edge > nonvegetated marsh, vegetated inner marsh, open water, macroalgae > oyster reef. We identified only 5 comparative studies on transient nekton growth in salt marshes. Fish growth in nonvegetated salt marsh was not significantly different from growth in open water or in macroalgae beds but was significantly lower than in seagrass. Growth of decapod crustaceans was higher in vegetated marsh than in nonvegetated marsh. Nekton survival in salt marsh (11 studies analyzed) was higher than in open water, lower than in oyster reef/cobble and not significantly different from survival in seagrass. When density, growth and survival are all considered, the relative nursery value of salt marshes for nekton appears higher than open water but lower than seagrass. Vegetated marsh appears to have a higher nursery value than nonvegetated marsh; however, tidal dynamics and nekton movement among marsh components complicates these comparisons. The available data have a strong geographical bias; most studies originated in the northern Gulf of Mexico or on the Atlantic coast of the United States. This bias may be significant because there is some evidence that salt marsh nursery value is dependent on geography, salinity regimes and tidal amplitude.

Abstract Large areas of cold hypoxic water occur as distinct strata in the eastern tropical Pacific (ETP) and Atlantic oceans as a result of high productivity initiated by intense nutrient upwelling. We show that this stratum restricts the depth distribution of tropical pelagic marlins, sailfish, and tunas by compressing the acceptable physical habitat into a narrow surface layer. This layer extends downward to a variable boundary defined by a shallow thermocline, often at 25 m, above a barrier of cold hypoxic water. The depth distributions of marlin and sailfish monitored with electronic tags and average dissolved oxygen (DO) and temperature profiles show that this cold hypoxic environment constitutes a lower habitat boundary in the ETP, but not in the western North Atlantic (WNA), where DO is not limiting. Eastern Pacific and eastern Atlantic sailfish are larger than those in WNA, where the hypoxic zone is much deeper or absent. Larger sizes may reflect enhanced foraging opportunities afforded by the closer proximity of predator and prey in compressed habitat, as well as by the higher productivity. The shallow band of acceptable habitat restricts these fishes to a very narrow surface layer and makes them more vulnerable to over‐exploitation by surface gears. Predictably, the long‐term landings of tropical pelagic tunas from areas of habitat compression have been far greater than in surrounding areas. Many tropical pelagic species in the Atlantic Ocean are currently either fully exploited or overfished and their future status could be quite sensitive to increased fishing pressures, particularly in areas of habitat compression.

The northern Gulf of Mexico (GoM) is a region strongly influenced by river discharges of freshwater and nutrients, which promote a highly productive coastal ecosystem that host commercially valuable marine species. A variety of climate and weather processes could potentially influence the river discharges into the northern GoM. However, their impacts on the coastal ecosystem remain poorly described. By using a regional ocean-biogeochemical model, complemented with satellite and in situ observations, here we show that El Niño - Southern Oscillation (ENSO) is a main driver of the interannual variability in salinity and plankton biomass during winter and spring. Composite analysis of salinity and plankton biomass anomalies shows a strong asymmetry between El Niño and La Niña impacts, with much larger amplitude and broader areas affected during El Niño conditions. Further analysis of the model simulation reveals significant coastal circulation anomalies driven by changes in salinity and winds. The coastal circulation anomalies in turn largely determine the spatial extent and distribution of the ENSO-induced plankton biomass variability. These findings highlight that ENSO-induced changes in salinity, plankton biomass, and coastal circulation across the northern GoM are closely interlinked and may significantly impact the abundance and distribution of fish and invertebrates.

Abstract Hollowed, A. B., Barange, M., Beamish, R., Brander, K., Cochrane, K., Drinkwater, K., Foreman, M., Hare, J., Holt, J., Ito, S-I., Kim, S., King, J., Loeng, H., MacKenzie, B., Mueter, F., Okey, T., Peck, M. A., Radchenko, V., Rice, J., Schirripa, M., Yatsu, A., and Yamanaka, Y. 2013. Projected impacts of climate change on marine fish and fisheries. – ICES Journal of Marine Science, 70: 1023–1037. This paper reviews current literature on the projected effects of climate change on marine fish and shellfish, their fisheries, and fishery-dependent communities throughout the northern hemisphere. The review addresses the following issues: (i) expected impacts on ecosystem productivity and habitat quantity and quality; (ii) impacts of changes in production and habitat on marine fish and shellfish species including effects on the community species composition, spatial distributions, interactions, and vital rates of fish and shellfish; (iii) impacts on fisheries and their associated communities; (iv) implications for food security and associated changes; and (v) uncertainty and modelling skill assessment. Climate change will impact fish and shellfish, their fisheries, and fishery-dependent communities through a complex suite of linked processes. Integrated interdisciplinary research teams are forming in many regions to project these complex responses. National and international marine research organizations serve a key role in the coordination and integration of research to accelerate the production of projections of the effects of climate change on marine ecosystems and to move towards a future where relative impacts by region could be compared on a hemispheric or global level. Eight research foci were identified that will improve the projections of climate impacts on fish, fisheries, and fishery-dependent communities.

From its source waters in the Gulf of Mexico the red tide dinoflagellate, Gymnodinium breve is moved throughout its oceanic range by major currents and eddy systems. The continental shelf off the west coast of Florida experiences frequent G. breve blooms (in 21 of the last 22 years) where the spatially explicit phases of G. breve blooms are closely coupled to physical processes. Bloom initiation occurs offshore and in association with shoreward movements of the Loop Current or spinoff eddies. A midshelf front maintained by seasonal wind reversals along the Florida west coast may serve as a growth and accumulation region for G. breve blooms and contribute to the reinoculation of nearshore waters. Local eddy circulation in the northeastern Gulf of Mexico and in the Dry Tortugas affects the retention and coastal distribution of blooms while the Florida Current and Gulf Stream transport cells out of the Gulf of Mexico and into the U.S. South Atlantic Bight. The causes of bloom dissipation are not well known but mixing or disruption of the water mass supporting G. breve cells, especially in combination with declining water temperatures, are important factors.

Abstract Oyster cultch was added to the lower intertidal fringe of three created Spartina alterniflora marshes to examine its value in protecting the marsh from erosion. Twelve 5‐m‐wide plots were established at each site, with six randomly selected plots unaltered (non‐cultched) and cultch added to the remaining (cultched) plots. Within each cultched plot, cultch was placed along the low tide fringe of the marsh during July 1992, in a band 1.5 m wide by 0.25 m deep. Marsh‐edge vegetation stability and sediment erosion were measured for each plot from September 1992 to April 1994. Significant differences ( p &lt; 0.05) in marsh‐edge vegetation change were detected at the only south‐facing site after a major southwester storm. Significantly different rates of sediment erosion and accretion also were observed at this same site. Areas upland of the marsh edge in the cultched areas showed an average accretion of 6.3 cm, while noncultched treatment areas showed an average loss of 3.2 cm. A second site, with a northern orientation, also experienced differential sediment accretion and erosion between treatment type, caused instead by boat wakes that were magnified by the abutment of a dredge effluent pipe across the entire front fringe of the site. During this period we observed significant differences in sediment accumulation, with the areas upland of the marsh edge in the cultched treatment having an average accretion of 2.9 cm and the noncultched an average loss of 1.3 cm.