NobleBlocks

Pacific Northwest Research Station

governmentPortland, United States

Research output, citation impact, and the most-cited recent papers from Pacific Northwest Research Station (United States). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
6.1K
Citations
392.3K
h-index
248
i10-index
5.4K
Also known as
Pacific Northwest Research Station

Top-cited papers from Pacific Northwest Research Station

THE WILDLAND–URBAN INTERFACE IN THE UNITED STATES
Volker C. Radeloff, Roger B. Hammer, Susan I. Stewart, Jeremy S. Fried +2 more
2005· Ecological Applications1.2Kdoi:10.1890/04-1413

The wildland–urban interface (WUI) is the area where houses meet or intermingle with undeveloped wildland vegetation. The WUI is thus a focal area for human– environment conflicts, such as the destruction of homes by wildfires, habitat fragmentation, introduction of exotic species, and biodiversity decline. Our goal was to conduct a spatially detailed assessment of the WUI across the United States to provide a framework for scientific inquiries into housing growth effects on the environment and to inform both national policymakers and local land managers about the WUI and associated issues. The WUI in the conterminous United States covers 719 156 km 2 (9% of land area) and contains 44.8 million housing units (39% of all houses). WUI areas are particularly widespread in the eastern United States, reaching a maximum of 72% of land area in Connecticut. California has the highest number of WUI housing units (5.1 million). The extent of the WUI highlights the need for ecological principles in land‐use planning as well as sprawl‐limiting policies to adequately address both wildfire threats and conservation problems.

Nature Contact and Human Health: A Research Agenda
Howard Frumkin, Gregory N. Bratman, Sara Jo Breslow, B.J. Cochran +4 more
2017· Environmental Health Perspectives1.2Kdoi:10.1289/ehp1663

BACKGROUND: At a time of increasing disconnectedness from nature, scientific interest in the potential health benefits of nature contact has grown. Research in recent decades has yielded substantial evidence, but large gaps remain in our understanding. OBJECTIVES: We propose a research agenda on nature contact and health, identifying principal domains of research and key questions that, if answered, would provide the basis for evidence-based public health interventions. DISCUSSION: ) implementation science. CONCLUSIONS: Nature contact may offer a range of human health benefits. Although much evidence is already available, much remains unknown. A robust research effort, guided by a focus on key unanswered questions, has the potential to yield high-impact, consequential public health insights. https://doi.org/10.1289/EHP1663.

Current status of Landsat program, science, and applications
Michael A. Wulder, Thomas R. Loveland, David P. Roy, Christopher J. Crawford +4 more
2019· Remote Sensing of Environment1.1Kdoi:10.1016/j.rse.2019.02.015

Formal planning and development of what became the first Landsat satellite commenced over 50 years ago in 1967. Now, having collected earth observation data for well over four decades since the 1972 launch of Landsat-1, the Landsat program is increasingly complex and vibrant. Critical programmatic elements are ensuring the continuity of high quality measurements for scientific and operational investigations, including ground systems, acquisition planning, data archiving and management, and provision of analysis ready data products. Free and open access to archival and new imagery has resulted in a myriad of innovative applications and novel scientific insights. The planning of future compatible satellites in the Landsat series, which maintain continuity while

Climate and wildfire area burned in western U.S. ecoprovinces, 1916–2003
Jeremy S. Littell, Donald McKenzie, David L. Peterson, A. L. Westerling
2009· Ecological Applications1.1Kdoi:10.1890/07-1183.1

The purpose of this paper is to quantify climatic controls on the area burned by fire in different vegetation types in the western United States. We demonstrate that wildfire area burned (WFAB) in the American West was controlled by climate during the 20th century (1916-2003). Persistent ecosystem-specific correlations between climate and WFAB are grouped by vegetation type (ecoprovinces). Most mountainous ecoprovinces exhibit strong year-of-fire relationships with low precipitation, low Palmer drought severity index (PDSI), and high temperature. Grass- and shrub-dominated ecoprovinces had positive relationships with antecedent precipitation or PDSI. For 1977-2003, a few climate variables explain 33-87% (mean = 64%) of WFAB, indicating strong linkages between climate and area burned. For 1916-2003, the relationships are weaker, but climate explained 25-57% (mean = 39%) of the variability. The variance in WFAB is proportional to the mean squared for different data sets at different spatial scales. The importance of antecedent climate (summer drought in forested ecosystems and antecedent winter precipitation in shrub and grassland ecosystems) indicates that the mechanism behind the observed fire-climate relationships is climatic preconditioning of large areas of low fuel moisture via drying of existing fuels or fuel production and drying. The impacts of climate change on fire regimes will therefore vary with the relative energy or water limitations of ecosystems. Ecoprovinces proved a useful compromise between ecologically imprecise state-level and localized gridded fire data. The differences in climate-fire relationships among the ecoprovinces underscore the need to consider ecological context (vegetation, fuels, and seasonal climate) to identify specific climate drivers of WFAB. Despite the possible influence of fire suppression, exclusion, and fuel treatment, WFAB is still substantially controlled by climate. The implications for planning and management are that future WFAB and adaptation to climate change will likely depend on ecosystem-specific, seasonal variation in climate. In fuel-limited ecosystems, fuel treatments can probably mitigate fire vulnerability and increase resilience more readily than in climate-limited ecosystems, in which large severe fires under extreme weather conditions will continue to account for most area burned.

OVERVIEW OF THE USE OF NATURAL VARIABILITY CONCEPTS IN MANAGING ECOLOGICAL SYSTEMS
Peter Landres, Penelope Morgan, Frederick J. Swanson
1999· Ecological Applications1.1Kdoi:10.1890/1051-0761(1999)009[1179:ootuon]2.0.co;2

Natural resource managers have used natural variability concepts since the early 1960s and are increasingly relying on these concepts to maintain biological diversity, to restore ecosystems that have been severely altered, and as benchmarks for assessing anthropogenic change. Management use of natural variability relies on two concepts: that past conditions and processes provide context and guidance for managing ecological systems today, and that disturbance-driven spatial and temporal variability is a vital attribute of nearly all ecological systems. We review the use of these concepts for managing ecological systems and landscapes. We conclude that natural variability concepts provide a framework for improved understanding of ecological systems and the changes occurring in these systems, as well as for evaluating the consequences of proposed management actions. Understanding the history of ecological systems (their past composition and structure, their spatial and temporal variability, and the principal processes that influenced them) helps managers set goals that are more likely to maintain and protect ecological systems and meet the social values desired for an area. Until we significantly improve our understanding of ecological systems, this knowledge of past ecosystem functioning is also one of the best means for predicting impacts to ecological systems today. These concepts can also be misused. No a priori time period or spatial extent should be used in defining natural variability. Specific goals, site-specific field data, inferences derived from data collected elsewhere, simulation models, and explicitly stated value judgment all must drive selection of the relevant time period and spatial extent used in defining natural variability. Natural variability concepts offer an opportunity and a challenge for ecologists to provide relevant information and to collaborate with managers to improve the management of ecological systems.

The forgotten stage of forest succession: early‐successional ecosystems on forest sites
Mark E. Swanson, Jerry F. Franklin, Robert L. Beschta, Charles M. Crisafulli +4 more
2010· Frontiers in Ecology and the Environment990doi:10.1890/090157

Early‐successional forest ecosystems that develop after stand‐replacing or partial disturbances are diverse in species, processes, and structure. Post‐disturbance ecosystems are also often rich in biological legacies, including surviving organisms and organically derived structures, such as woody debris. These legacies and post‐disturbance plant communities provide resources that attract and sustain high species diversity, including numerous early‐successional obligates, such as certain woodpeckers and arthropods. Early succession is the only period when tree canopies do not dominate the forest site, and so this stage can be characterized by high productivity of plant species (including herbs and shrubs), complex food webs, large nutrient fluxes, and high structural and spatial complexity. Different disturbances contrast markedly in terms of biological legacies, and this will influence the resultant physical and biological conditions, thus affecting successional pathways. Management activities, such as post‐disturbance logging and dense tree planting, can reduce the richness within and the duration of early‐successional ecosystems. Where maintenance of biodiversity is an objective, the importance and value of these natural early‐successional ecosystems are underappreciated.

Global Warming and Extinctions of Endemic Species from Biodiversity Hotspots
Jay R. Malcolm, Canran Liu, Ronald P. Neilson, Lara J. Hansen +1 more
2006· Conservation Biology909doi:10.1111/j.1523-1739.2006.00364.x

Global warming is a key threat to biodiversity, but few researchers have assessed the magnitude of this threat at the global scale. We used major vegetation types (biomes) as proxies for natural habitats and, based on projected future biome distributions under doubled-CO2 climates, calculated changes in habitat areas and associated extinctions of endemic plant and vertebrate species in biodiversity hotspots. Because of numerous uncertainties in this approach, we undertook a sensitivity analysis of multiple factors that included (1) two global vegetation models, (2) different numbers of biome classes in our biome classification schemes, (3) different assumptions about whether species distributions were biome specific or not, and (4) different migration capabilities. Extinctions were calculated using both species-area and endemic-area relationships. In addition, average required migration rates were calculated for each hotspot assuming a doubled-CO2 climate in 100 years. Projected percent extinctions ranged from <1 to 43% of the endemic biota (average 11.6%), with biome specificity having the greatest influence on the estimates, followed by the global vegetation model and then by migration and biome classification assumptions. Bootstrap comparisons indicated that effects on hotpots as a group were not significantly different from effects on random same-biome collections of grid cells with respect to biome change or migration rates; in some scenarios, however, botspots exhibited relatively high biome change and low migration rates. Especially vulnerable hotspots were the Cape Floristic Region, Caribbean, Indo-Burma, Mediterranean Basin, Southwest Australia, and Tropical Andes, where plant extinctions per hotspot sometimes exceeded 2000 species. Under the assumption that projected habitat changes were attained in 100 years, estimated global-warming-induced rates of species extinctions in tropical hotspots in some cases exceeded those due to deforestation, supporting suggestions that global warming is one of the most serious threats to the planet's biodiversity.

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
Keith L. Adams, Richard Cronn, Ryan Percifield, Jonathan F. Wendel
2003· Proceedings of the National Academy of Sciences827doi:10.1073/pnas.0630618100

Most eukaryotes have genomes that exhibit high levels of gene redundancy, much of which seems to have arisen from one or more cycles of genome doubling. Polyploidy has been particularly prominent during flowering plant evolution, yielding duplicated genes (homoeologs) whose expression may be retained or lost either as an immediate consequence of polyploidization or on an evolutionary timescale. Expression of 40 homoeologous gene pairs was assayed by cDNA-single-stranded conformation polymorphism in natural (1- to 2-million-yr-old) and synthetic tetraploid cotton (Gossypium) to determine whether homoeologous gene pairs are expressed at equal levels after polyploid formation. Silencing or unequal expression of one homoeolog was documented for 10 of 40 genes examined in ovules of Gossypium hirsutum. Assays of homoeolog expression in 10 organs revealed variable expression levels and silencing, depending on the gene and organ examined. Remarkably, silencing and biased expression of some gene pairs are reciprocal and developmentally regulated, with one homoeolog showing silencing in some organs and the other being silenced in other organs, suggesting rapid subfunctionalization. Duplicate gene expression was examined in additional natural polyploids to characterize the pace at which expression alteration evolves. Analysis of a synthetic tetraploid revealed homoeolog expression and silencing patterns that sometimes mirrored those of the natural tetraploid. Both long-term and immediate responses to polyploidization were implicated. Data suggest that some silencing events are epigenetically induced during the allopolyploidization process.

Effects on Carbon Storage of Conversion of Old-Growth Forests to Young Forests
Mark E. Harmon, William K. Ferrell, Jerry F. Franklin
1990· Science823doi:10.1126/science.247.4943.699

Simulations of carbon storage suggest that conversion of old-growth forests to young fast-growing forests will not decrease atmospheric carbon dioxide (CO(2)) in general, as has been suggested recently. During simulated timber harvest, on-site carbon storage is reduced considerably and does not approach old-growth storage capacity for at least 200 years. Even when sequestration of carbon in wooden buildings is included in the models, timber harvest results in a net flux of CO(2) to the atmosphere. To offset this effect, the production of lumber and other long-term wood products, as well as the life-span of buildings, would have to increase markedly. Mass balance calculations indicate that the conversion of 5 x 10(9) to 1.8 x 10(9) megagrams of carbon to the atmosphere.

NITROGEN EXCESS IN NORTH AMERICAN ECOSYSTEMS: PREDISPOSING FACTORS, ECOSYSTEM RESPONSES, AND MANAGEMENT STRATEGIES
Mark E. Fenn, Mark A. Poth, John D. Aber, Jill S. Baron +4 more
1998· Ecological Applications774doi:10.1890/1051-0761(1998)008[0706:neinae]2.0.co;2

Most forests in North America remain nitrogen limited, although recent studies have identified forested areas that exhibit symptoms of N excess, analogous to overfertilization of arable land. Nitrogen excess in watersheds is detrimental because of disruptions in plant/soil nutrient relations, increased soil acidification and aluminum mobility, increased emissions of nitrogenous greenhouse gases from soil, reduced methane consumption in soil, decreased water quality, toxic effects on freshwater biota, and eutrophication of coastal marine waters. Elevated nitrate (NO3−) loss to groundwater or surface waters is the primary symptom of N excess. Additional symptoms include increasing N concentrations and higher N:nutrient ratios in foliage (i.e., N:Mg, N:P), foliar accumulation of amino acids or NO3−, and low soil C:N ratios. Recent nitrogen-fertilization studies in New England and Europe provide preliminary evidence that some forests receiving chronic N inputs may decline in productivity and experience greater mortality. Long-term fertilization at Mount Ascutney, Vermont, suggests that declining and slow N-cycling coniferous stands may be replaced by fast-growing and fast N-cycling deciduous forests. Symptoms of N saturation are particularly severe in high-elevation, nonaggrading spruce–fir ecosystems in the Appalachian Mountains and in eastern hardwood watersheds at the Fernow Experimental Forest near Parsons, West Virginia. In the Los Angeles Air Basin, mixed conifer forests and chaparral watersheds with high smog exposure are N saturated and exhibit the highest streamwater NO3− concentrations for wildlands in North America. High-elevation alpine watersheds in the Colorado Front Range and a deciduous forest in Ontario, Canada, are N saturated, although N deposition is moderate (∼8 kg·ha−1·yr−1). In contrast, the Harvard Forest hardwood stand in Massachusetts has absorbed >900 kg N/ha during 8 yr of N amendment studies without significant NO3− leaching, illustrating that ecosystems vary widely in the capacity to retain N inputs. Overly mature forests with high N deposition, high soil N stores, and low soil C:N ratios are prone to N saturation and NO3− leaching. Additional characteristics favoring low N retention capacity include a short growing season (reduced plant N demand) and reduced contact time between drainage water and soil (i.e., porous coarse-textured soils, exposed bedrock or talus). Temporal patterns of hydrologic fluxes interact with biotic uptake and internal cycling patterns in determining ecosystem N retention. Soils are the largest storage pool for N inputs, although vegetation uptake is also important. Recent studies indicate that nitrification may be widespread in undisturbed ecosystems, and that microbial assimilation of NO3− may be a significant N retention mechanism, contrary to previous assumptions. Further studies are needed to elucidate the sites, forms, and mechanisms of N retention and incorporation into soil organic matter, and to test potential management options for mitigating N losses from forests. Implementation of intensive management practices in N-saturated ecosystems may only be feasible in high-priority areas and on a limited scale. Reduction of N emissions would be a preferable solution, although major reductions in the near future are unlikely in many areas due to economic, energy-use, policy, and demographic considerations.

Nitrous oxide emission from denitrification in stream and river networks
Jake J. Beaulieu, Jennifer L. Tank, Stephen K. Hamilton, W. M. Wollheim +4 more
2010· Proceedings of the National Academy of Sciences733doi:10.1073/pnas.1011464108

Nitrous oxide (N(2)O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N(2)O via microbial denitrification that converts N to N(2)O and dinitrogen (N(2)). The fraction of denitrified N that escapes as N(2)O rather than N(2) (i.e., the N(2)O yield) is an important determinant of how much N(2)O is produced by river networks, but little is known about the N(2)O yield in flowing waters. Here, we present the results of whole-stream (15)N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N(2)O at rates that increase with stream water nitrate (NO(3)(-)) concentrations, but that <1% of denitrified N is converted to N(2)O. Unlike some previous studies, we found no relationship between the N(2)O yield and stream water NO(3)(-). We suggest that increased stream NO(3)(-) loading stimulates denitrification and concomitant N(2)O production, but does not increase the N(2)O yield. In our study, most streams were sources of N(2)O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg·y(-1) of anthropogenic N inputs to N(2)O in river networks, equivalent to 10% of the global anthropogenic N(2)O emission rate. This estimate of stream and river N(2)O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change.

Climate change and forest diseases
Rona N. Sturrock, Susan J. Frankel, A. V. Brown, Paul E. Hennon +4 more
2011· Plant Pathology732doi:10.1111/j.1365-3059.2010.02406.x

As climate changes, the effects of forest diseases on forest ecosystems will change. We review knowledge of relationships between climate variables and several forest diseases, as well as current evidence of how climate, host and pathogen interactions are responding or might respond to climate change. Many forests can be managed to both adapt to climate change and minimize the undesirable effects of expected increases in tree mortality. We discuss four types of forest and disease management tactics – monitoring, forecasting, planning and mitigation – and provide case studies of yellow‐cedar decline and sudden aspen decline to illustrate how forest diseases might be managed in the face of climate change. The uncertainties inherent to climate change effects can be diminished by conducting research, assessing risks, and linking results to forest policy, planning and decision making.

Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
Shannon C. K. Straub, Matthew Parks, Kevin Weitemier, Mark Fishbein +2 more
2011· American Journal of Botany724doi:10.3732/ajb.1100335

PREMISE OF THE STUDY: Just as Sanger sequencing did more than 20 years ago, next-generation sequencing (NGS) is poised to revolutionize plant systematics. By combining multiplexing approaches with NGS throughput, systematists may no longer need to choose between more taxa or more characters. Here we describe a genome skimming (shallow sequencing) approach for plant systematics. METHODS: Through simulations, we evaluated optimal sequencing depth and performance of single-end and paired-end short read sequences for assembly of nuclear ribosomal DNA (rDNA) and plastomes and addressed the effect of divergence on reference-guided plastome assembly. We also used simulations to identify potential phylogenetic markers from low-copy nuclear loci at different sequencing depths. We demonstrated the utility of genome skimming through phylogenetic analysis of the Sonoran Desert clade (SDC) of Asclepias (Apocynaceae). KEY RESULTS: Paired-end reads performed better than single-end reads. Minimum sequencing depths for high quality rDNA and plastome assemblies were 40× and 30×, respectively. Divergence from the reference significantly affected plastome assembly, but relatively similar references are available for most seed plants. Deeper rDNA sequencing is necessary to characterize intragenomic polymorphism. The low-copy fraction of the nuclear genome was readily surveyed, even at low sequencing depths. Nearly 160000 bp of sequence from three organelles provided evidence of phylogenetic incongruence in the SDC. CONCLUSIONS: Adoption of NGS will facilitate progress in plant systematics, as whole plastome and rDNA cistrons, partial mitochondrial genomes, and low-copy nuclear markers can now be efficiently obtained for molecular phylogenetics studies.

Ongoing declines for the world’s amphibians in the face of emerging threats
Jennifer Luedtke, Janice Chanson, Kelsey Neam, Louise Hobin +4 more
2023· Nature706doi:10.1038/s41586-023-06578-4

Abstract Systematic assessments of species extinction risk at regular intervals are necessary for informing conservation action 1,2 . Ongoing developments in taxonomy, threatening processes and research further underscore the need for reassessment 3,4 . Here we report the findings of the second Global Amphibian Assessment, evaluating 8,011 species for the International Union for Conservation of Nature Red List of Threatened Species. We find that amphibians are the most threatened vertebrate class (40.7% of species are globally threatened). The updated Red List Index shows that the status of amphibians is deteriorating globally, particularly for salamanders and in the Neotropics. Disease and habitat loss drove 91% of status deteriorations between 1980 and 2004. Ongoing and projected climate change effects are now of increasing concern, driving 39% of status deteriorations since 2004, followed by habitat loss (37%). Although signs of species recoveries incentivize immediate conservation action, scaled-up investment is urgently needed to reverse the current trends.

Role of Tannins in Defending Plants Against Ruminants: Reduction in Protein Availability
Charles T. Robbins, Thomas A. Hanley, Ann Hagerman, Olav Hjeljord +3 more
1987· Ecology697doi:10.2307/1938809

We tested the hypothesis that tannins defend plants against large herbivores by decreasing protein availability. Digestion trials were conducted with mule deer (Odocoileus hemionus) and results from previous trials with white—tailed deer (O. virginianus), moose (Alces alces), caribou/reindeer (Rangifer tarandus), and elk (Cervus elaphus) were summarized to evaluate dietary factors affecting protein availability. The digestibility of plant protein in feeds with minimal tannins, such as grasses and agriculturally produced legumes and grains, was a highly predictable function of the total protein content and the amount of nondigestible, fiber—bound protein. Digestible protein in plants containing significant tannins was lower than predicted from regressions for low—tannin feeds. The reduction in digestible protein was proportional to the protein—precipitating capacity of the plant tannins. Deciduous browse stems collected in winter had very low levels of protein—precipitating tannins and only a slightly lower protein availability than predicted. Tannins are not important in the defense of most deciduous tree shrub stems consumed by these herbivores. Tannins in flowers and forb, tree, and shrub leaves markedly reduced protein availability. Tannins must be considered in understanding the defensive strategies of leaves and flowers. Voluntary intake of the high—phenolic forages was significantly reduced below ingestion rates for grasses, legumes, and pelleted diets. It is hypothesized that soluble phenolics that do not inhibit digestion but are absorbed and reduced intake through their toxicity are more important in defending some plant parts against ruminants than are digestion—reducing tannins.

Estimates of forest canopy height and aboveground biomass using ICESat
M. A. Lefsky, David J. Harding, Michael Keller, Warren B. Cohen +4 more
2005· Geophysical Research Letters668doi:10.1029/2005gl023971

Exchange of carbon between forests and the atmosphere is a vital component of the global carbon cycle. Satellite laser altimetry has a unique capability for estimating forest canopy height, which has a direct and increasingly well understood relationship to aboveground carbon storage. While the Geoscience Laser Altimeter System (GLAS) onboard the Ice, Cloud and land Elevation Satellite (ICESat) has collected an unparalleled dataset of lidar waveforms over terrestrial targets, processing of ICESat data to estimate forest height is complicated by the pulse broadening associated with large‐footprint, waveform‐sampling lidar. We combined ICESat waveforms and ancillary topography from the Shuttle Radar Topography Mission to estimate maximum forest height in three ecosystems; tropical broadleaf forests in Brazil, temperate broadleaf forests in Tennessee, and temperate needleleaf forests in Oregon. Final models for each site explained between 59% and 68% of variance in field‐measured forest canopy height (RMSE between 4.85 and 12.66 m). In addition, ICESat‐derived heights for the Brazilian plots were correlated with field‐estimates of aboveground biomass (r 2 = 73%, RMSE = 58.3 Mgha −1 ).

Hydrologic connectivity between landscapes and streams: Transferring reach‐ and plot‐scale understanding to the catchment scale
Kelsey Jencso, B. L. McGlynn, M. N. Gooseff, Steven M. Wondzell +2 more
2009· Water Resources Research643doi:10.1029/2008wr007225

The relationship between catchment structure and runoff characteristics is poorly understood. In steep headwater catchments with shallow soils the accumulation of hillslope area (upslope accumulated area (UAA)) is a hypothesized first‐order control on the distribution of soil water and groundwater. Hillslope‐riparian water table connectivity represents the linkage between the dominant catchment landscape elements (hillslopes and riparian zones) and the channel network. Hydrologic connectivity between hillslope‐riparian‐stream (HRS) landscape elements is heterogeneous in space and often temporally transient. We sought to test the relationship between UAA and the existence and longevity of HRS shallow groundwater connectivity. We quantified water table connectivity based on 84 recording wells distributed across 24 HRS transects within the Tenderfoot Creek Experimental Forest (U.S. Forest Service), northern Rocky Mountains, Montana. Correlations were observed between the longevity of HRS water table connectivity and the size of each transect's UAA ( r 2 = 0.91). We applied this relationship to the entire stream network to quantify landscape‐scale connectivity through time and ascertain its relationship to catchment‐scale runoff dynamics. We found that the shape of the estimated annual landscape connectivity duration curve was highly related to the catchment flow duration curve ( r 2 = 0.95). This research suggests internal catchment landscape structure (topography and topology) as a first‐order control on runoff source area and whole catchment response characteristics.

Global patterns in the vulnerability of ecosystems to vegetation shifts due to climate change
Patrick González, Ronald P. Neilson, James M. Lenihan, Raymond J. Drapek
2010· Global Ecology and Biogeography634doi:10.1111/j.1466-8238.2010.00558.x

ABSTRACT Aim Climate change threatens to shift vegetation, disrupting ecosystems and damaging human well‐being. Field observations in boreal, temperate and tropical ecosystems have detected biome changes in the 20th century, yet a lack of spatial data on vulnerability hinders organizations that manage natural resources from identifying priority areas for adaptation measures. We explore potential methods to identify areas vulnerable to vegetation shifts and potential refugia. Location Global vegetation biomes. Methods We examined nine combinations of three sets of potential indicators of the vulnerability of ecosystems to biome change: (1) observed changes of 20th‐century climate, (2) projected 21st‐century vegetation changes using the MC1 dynamic global vegetation model under three Intergovernmental Panel on Climate Change (IPCC) emissions scenarios, and (3) overlap of results from (1) and (2). Estimating probability density functions for climate observations and confidence levels for vegetation projections, we classified areas into vulnerability classes based on IPCC treatment of uncertainty. Results One‐tenth to one‐half of global land may be highly (confidence 0.80–0.95) to very highly (confidence ≥ 0.95) vulnerable. Temperate mixed forest, boreal conifer and tundra and alpine biomes show the highest vulnerability, often due to potential changes in wildfire. Tropical evergreen broadleaf forest and desert biomes show the lowest vulnerability. Main conclusions Spatial analyses of observed climate and projected vegetation indicate widespread vulnerability of ecosystems to biome change. A mismatch between vulnerability patterns and the geographic priorities of natural resource organizations suggests the need to adapt management plans. Approximately a billion people live in the areas classified as vulnerable.

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
Matthew Parks, Richard Cronn, Aaron Liston
2009· BMC Biology624doi:10.1186/1741-7007-7-84

BACKGROUND: Molecular evolutionary studies share the common goal of elucidating historical relationships, and the common challenge of adequately sampling taxa and characters. Particularly at low taxonomic levels, recent divergence, rapid radiations, and conservative genome evolution yield limited sequence variation, and dense taxon sampling is often desirable. Recent advances in massively parallel sequencing make it possible to rapidly obtain large amounts of sequence data, and multiplexing makes extensive sampling of megabase sequences feasible. Is it possible to efficiently apply massively parallel sequencing to increase phylogenetic resolution at low taxonomic levels? RESULTS: We reconstruct the infrageneric phylogeny of Pinus from 37 nearly-complete chloroplast genomes (average 109 kilobases each of an approximately 120 kilobase genome) generated using multiplexed massively parallel sequencing. 30/33 ingroup nodes resolved with > or = 95% bootstrap support; this is a substantial improvement relative to prior studies, and shows massively parallel sequencing-based strategies can produce sufficient high quality sequence to reach support levels originally proposed for the phylogenetic bootstrap. Resampling simulations show that at least the entire plastome is necessary to fully resolve Pinus, particularly in rapidly radiating clades. Meta-analysis of 99 published infrageneric phylogenies shows that whole plastome analysis should provide similar gains across a range of plant genera. A disproportionate amount of phylogenetic information resides in two loci (ycf1, ycf2), highlighting their unusual evolutionary properties. CONCLUSION: Plastome sequencing is now an efficient option for increasing phylogenetic resolution at lower taxonomic levels in plant phylogenetic and population genetic analyses. With continuing improvements in sequencing capacity, the strategies herein should revolutionize efforts requiring dense taxon and character sampling, such as phylogeographic analyses and species-level DNA barcoding.

Xylem hydraulic safety margins in woody plants: coordination of stomatal control of xylem tension with hydraulic capacitance
Frederick C. Meinzer, Daniel M. Johnson, Barbara Lachenbruch, Katherine A. McCulloh +1 more
2009· Functional Ecology613doi:10.1111/j.1365-2435.2009.01577.x

Summary 1. The xylem pressure inducing 50% loss of hydraulic conductivity due to embolism ( P 50 ) is widely used for comparisons of xylem vulnerability among species and across aridity gradients. However, despite its utility as an index of resistance to catastrophic xylem failure under extreme drought, P 50 may have no special physiological relevance in the context of stomatal regulation of daily minimum xylem pressure and avoidance of hydraulic failure under non‐extreme conditions. Moreover, few studies of hydraulic architecture have accounted for the buffering influence of tissue hydraulic capacitance on daily fluctuations in xylem pressure in intact plants. 2. We used data from 104 coniferous and angiosperm species representing a range of woody growth forms and habitat types to evaluate trends in three alternative xylem hydraulic safety margins based on features of their stem xylem vulnerability curves and regulation of daily minimum stem water potential (Ψ stem min ) under non‐extreme conditions: (i) Ψ stem min − P 50 , (ii) Ψ stem min − P e , the difference between Ψ stem min and the threshold xylem pressure at which loss of conductivity begins to increase rapidly ( P e ) and (iii) P e − P 50 , an estimate of the steepness of the vulnerability curve between P e and P 50 . Additionally, we assessed relationships between xylem capacitance, species‐specific set‐points for daily minimum stem water potential and hydraulic safety margins in a subset of species for which relevant data were available. 3. The three types of hydraulic safety margin defined increased with decreasing species‐specific set‐points for Ψ stem min , suggesting a diminishing role of stem capacitance in slowing fluctuations in xylem pressure as Ψ stem min became more negative. The trends in hydraulic safety were similar among coniferous and angiosperm species native to diverse habitat types. 4. Our results suggest that here is a continuum of relative reliance on different mechanisms that confer hydraulic safety under dynamic conditions. Species with low capacitance and denser wood experience greater daily maximum xylem tension and appear to rely primarily on xylem structural features to avoid embolism, whereas in species with high capacitance and low wood density avoidance of embolism appears to be achieved primarily via reliance on transient release of stored water to constrain transpiration‐induced fluctuations in xylem tension.