Senckenberg Natural History Collections Dresden

Functional traits offer a rich quantitative framework for developing and testing theories in evolutionary biology, ecology and ecosystem science. However, the potential of functional traits to drive theoretical advances and refine models of global change can only be fully realised when species-level information is complete. Here we present the AVONET dataset containing comprehensive functional trait data for all birds, including six ecological variables, 11 continuous morphological traits, and information on range size and location. Raw morphological measurements are presented from 90,020 individuals of 11,009 extant bird species sampled from 181 countries. These data are also summarised as species averages in three taxonomic formats, allowing integration with a global phylogeny, geographical range maps, IUCN Red List data and the eBird citizen science database. The AVONET dataset provides the most detailed picture of continuous trait variation for any major radiation of organisms, offering a global template for testing hypotheses and exploring the evolutionary origins, structure and functioning of biodiversity.

Biodiversity is unevenly distributed on Earth and hotspots of biodiversity are often associated with areas that have undergone orogenic activity during recent geological history (i.e. tens of millions of years). Understanding the underlying processes that have driven the accumulation of species in some areas and not in others may help guide prioritization in conservation and may facilitate forecasts on ecosystem services under future climate conditions. Consequently, the study of the origin and evolution of biodiversity in mountain systems has motivated growing scientific interest. Despite an increasing number of studies, the origin and evolution of diversity hotspots associated with the Qinghai-Tibetan Plateau (QTP) remains poorly understood. We review literature related to the diversification of organisms linked to the uplift of the QTP. To promote hypothesis-based research, we provide a geological and palaeoclimatic scenario for the region of the QTP and argue that further studies would benefit from providing a complete set of complementary analyses (molecular dating, biogeographic, and diversification rates analyses) to test for a link between organismic diversification and past geological and climatic changes in this region. In general, we found that the contribution of biological interchange between the QTP and other hotspots of biodiversity has not been sufficiently studied to date. Finally, we suggest that the biological consequences of the uplift of the QTP would be best understood using a meta-analysis approach, encompassing studies on a variety of organisms (plants and animals) from diverse habitats (forests, meadows, rivers), and thermal belts (montane, subalpine, alpine, nival). Since the species diversity in the QTP region is better documented for some organismic groups than for others, we suggest that baseline taxonomic work should be promoted.

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ABSTRACT Glacial refugia were core areas for the survival of temperate species during unfavourable environmental conditions and were the sources of postglacial recolonizations. Unfortunately, the locations of glacial refugia of animals and plants are usually described by models, without reference to facts about real geographical ranges at that time. Careful consideration of the faunal assemblages of archaeological sites from the Younger Palaeolithic, which are precisely dated to the Last Glacial Maximum (LGM), gives indications about the distribution of species during the LGM (23 000–16 000 bp ) and provides evidence for the locations of glacial refugia for mammalian species in Europe. In Europe, 47 LGM sites, dating from 23 000 to 16 000 bp and containing typical temperate mammal species, have been described. The geographical range of these archaeological sites clearly shows a distribution which differs from the hypothesized traditional refuge areas of the temperate fauna. A considerable number of sites situated in the Dordogne in south‐western France and the Carpathian region contain records of red deer Cervus elaphus , roe deer Capreolus capreolus , wild boar Sus scrofa and red fox Vulpes vulpes . The faunal composition of the majority of the evaluated Palaeolithic sites in the southern European peninsulas (with the exception of Greece), as well as France and the Carpathian region, indicates the co‐occurrence of these temperate species with cold‐adapted faunal elements such as mammoth Mammuthus primigenius and/or reindeer Rangifer tarandus . The survival of species in Central European refugia would have significant consequences for phylogeography and would be revealed by the dominant distribution of haplotypes, originating from this region. A Carpathian refuge could also be the reason for the very early records of small mammals or mustelids from the Late‐Glacial or Interstadials before the LGM in regions like southern Germany.

Species distributed across vast continental areas and across major biomes provide unique model systems for studies of biotic diversification, yet also constitute daunting financial, logistic and political challenges for data collection across such regions. The tree frog Dendropsophus minutus (Anura: Hylidae) is a nominal species, continentally distributed in South America, that may represent a complex of multiple species, each with a more limited distribution. To understand the spatial pattern of molecular diversity throughout the range of this species complex, we obtained DNA sequence data from two mitochondrial genes, cytochrome oxidase I (COI) and the 16S rhibosomal gene (16S) for 407 samples of D. minutus and closely related species distributed across eleven countries, effectively comprising the entire range of the group. We performed phylogenetic and spatially explicit phylogeographic analyses to assess the genetic structure of lineages and infer ancestral areas. We found 43 statistically supported, deep mitochondrial lineages, several of which may represent currently unrecognized distinct species. One major clade, containing 25 divergent lineages, includes samples from the type locality of D. minutus. We defined that clade as the D. minutus complex. The remaining lineages together with the D. minutus complex constitute the D. minutus species group. Historical analyses support an Amazonian origin for the D. minutus species group with a subsequent dispersal to eastern Brazil where the D. minutus complex originated. According to our dataset, a total of eight mtDNA lineages have ranges >100,000 km2. One of them occupies an area of almost one million km2 encompassing multiple biomes. Our results, at a spatial scale and resolution unprecedented for a Neotropical vertebrate, confirm that widespread amphibian species occur in lowland South America, yet at the same time a large proportion of cryptic diversity still remains to be discovered.

Abstract Within the Appalachian–Variscan orogen of North America and southern Europe lie a collection of terranes that were distributed along the northern margin of West Gondwana in the late Neoproterozoic and early Palaeozoic. These peri-Gondwanan terranes are characterized by voluminous late Neoproterozoic ( c . 640–570 Ma) arc magmatism and cogenetic basins, and their tectonothermal histories provide fundamental constraints on the palaeogeography of this margin and on palaeocontinental reconstructions for this important period in Earth history. Field and geochemical studies indicate that arc magmatism generally terminated diachronously with the formation of a transform margin, leading by the Early–Middle Cambrian to the development of a shallow-marine platform–passive margin characterized by Gondwanan fauna. However, important differences exist between these terranes that constrain their relative palaeogeography in the late Neoproterozoic and permit changes in the geometry of the margin from the late Neoproterozoic to the Early Cambrian to be reconstructed. On the basis of basement isotopic composition, the terranes can be subdivided into: (1) Avalonian-type (e.g. West Avalonia, East Avalonia, Meguma, Carolinia, Moravia–Silesia), which developed on juvenile, c . 1.3–1.0 Ga crust originating within the Panthalassa-like Mirovoi Ocean surrounding Rodinia, and which were accreted to the northern Gondwanan margin by c . 650 Ma; (2) Cadomian-type (e.g. North Armorican Massif, Ossa–Morena, Saxo-Thuringia, Moldanubia), which formed along the West African margin by recycling ancient ( c . 2.0–2.2 Ga) West African crust; (3) Ganderian-type (e.g. Ganderia, Florida, the Maya terrane and possible the NW Iberian domain and South Armorican Massif), which formed along the Amazonian margin of Gondwana by recycling Avalonian and older Amazonian basement; and (4) cratonic terranes (e.g. Oaxaquia and the Chortis block), which represent displaced Amazonian portions of cratonic Gondwana. These contrasts imply the existence of fundamental sutures between these terranes prior to c . 650 Ma. Derivation of the Cadomian-type terranes from the West African craton is further supported by detrital zircon data from their Neoproterozoic–Ediacaran clastic rocks, which contrast with such data from the Avalonian- and Ganderian-type terranes that suggest derivation from the Amazonian craton. Differences in Neoproterozoic and Ediacaran palaeogeography are also matched in some terranes by contrasts in Cambrian faunal and sedimentary provenance data. Platformal assemblages in certain Avalonian-type terranes (e.g. West Avalonia and East Avalonia) have cool-water, high-latitude fauna and detrital zircon signatures consistent with proximity to the Amazonian craton. Conversely, platformal assemblages in certain Cadomian-type terranes (e.g. North Armorican Massif, Ossa–Morena) show a transition from tropical to temperate waters and detrital zircon signatures that suggest continuing proximity to the West African craton. Other terranes (e.g. NW Iberian domain, Meguma) show Avalonian-type basement and/or detrital zircon signatures in the Neoproterozoic, but develop Cadomian-type signatures in the Cambrian. This change suggests tectonic slivering and lateral transport of terranes along the northern margin of West Gondwana consistent with the transform termination of arc magmatism. In the early Palaeozoic, several peri-Gondwanan terranes (e.g. Avalonia, Carolinia, Ganderia, Meguma) separated from West Gondwana, either separately or together, and had accreted to Laurentia by the Silurian–Devonian. Others (e.g. Cadomian-type terranes, Florida, Maya terrane, Oaxaquia, Chortis block) remained attached to Gondwana and were transferred to Laurussia only with the closure of the Rheic Ocean in the late Palaeozoic.

The Rheic Ocean was one of the most important oceans of the Paleozoic Era. It lay between Laurentia and Gondwana from the Early Ordovician and closed to produce the vast Ouachita-Alleghanian-Variscan orogen during the assembly of Pangea. Rifting began in the Cambrian as a continuation of Neoproterozoic orogenic activity and the ocean opened in the Early Ordovician with the separation of several Neoproterozoic arc terranes from the continental margin of northern Gondwana along the line of a former suture. The rapid rate of ocean opening suggests it was driven by slab pull in the outboard Iapetus Ocean. The ocean reached its greatest width with the closure of Iapetus and the accretion of the peri-Gondwanan arc terranes to Laurentia in the Silurian. Ocean closure began in the Devonian and continued through the Mississippian as Gondwana sutured to Laurussia to form Pangea. The ocean consequently plays a dominant role in the Appalachian-Ouachita orogeny of North America, in the basement geology of southern Europe, and in the Paleozoic sedimentary, structural and tectonothermal record from Middle America to the Middle East. Its closure brought the Paleozoic Era to an end.

Zoonomia is the largest comparative genomics resource for mammals produced to date. By aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect fitness and alter disease risk. At least 332 million bases (~10.7%) in the human genome are unusually conserved across species (evolutionarily constrained) relative to neutrally evolving repeats, and 4552 ultraconserved elements are nearly perfectly conserved. Of 101 million significantly constrained single bases, 80% are outside protein-coding exons and half have no functional annotations in the Encyclopedia of DNA Elements (ENCODE) resource. Changes in genes and regulatory elements are associated with exceptional mammalian traits, such as hibernation, that could inform therapeutic development. Earth's vast and imperiled biodiversity offers distinctive power for identifying genetic variants that affect genome function and organismal phenotypes.

Americanae nace como un proyecto conjunto que surge dentro de la Red Europea de Información y Documentación sobre América Latina (REDIAL), y que ha afrontado la Biblioteca de la Agencia Española de Cooperación Internacional para el Desarrollo (AECID). Esta nueva biblioteca virtual hace más accesibles los libros digitales de tema americanista a los investigadores y usuarios interesados de cualquier parte del mundo.

Abstract. The Eocene–Oligocene transition (EOT) was a climate shift from a largely ice-free greenhouse world to an icehouse climate, involving the first major glaciation of Antarctica and global cooling occurring ∼34 million years ago (Ma) and lasting ∼790 kyr. The change is marked by a global shift in deep-sea δ18O representing a combination of deep-ocean cooling and growth in land ice volume. At the same time, multiple independent proxies for ocean temperature indicate sea surface cooling, and major changes in global fauna and flora record a shift toward more cold-climate-adapted species. The two principal suggested explanations of this transition are a decline in atmospheric CO2 and changes to ocean gateways, while orbital forcing likely influenced the precise timing of the glaciation. Here we review and synthesise proxy evidence of palaeogeography, temperature, ice sheets, ocean circulation and CO2 change from the marine and terrestrial realms. Furthermore, we quantitatively compare proxy records of change to an ensemble of climate model simulations of temperature change across the EOT. The simulations compare three forcing mechanisms across the EOT: CO2 decrease, palaeogeographic changes and ice sheet growth. Our model ensemble results demonstrate the need for a global cooling mechanism beyond the imposition of an ice sheet or palaeogeographic changes. We find that CO2 forcing involving a large decrease in CO2 of ca. 40 % (∼325 ppm drop) provides the best fit to the available proxy evidence, with ice sheet and palaeogeographic changes playing a secondary role. While this large decrease is consistent with some CO2 proxy records (the extreme endmember of decrease), the positive feedback mechanisms on ice growth are so strong that a modest CO2 decrease beyond a critical threshold for ice sheet initiation is well capable of triggering rapid ice sheet growth. Thus, the amplitude of CO2 decrease signalled by our data–model comparison should be considered an upper estimate and perhaps artificially large, not least because the current generation of climate models do not include dynamic ice sheets and in some cases may be under-sensitive to CO2 forcing. The model ensemble also cannot exclude the possibility that palaeogeographic changes could have triggered a reduction in CO2.

The Rheic Ocean, which separated Laurussia from Gondwana after the closure of Iapetus, was one of the principal oceans of the Paleozoic. Its suture extends over 10,000 km from Middle America to Eastern Europe, and its closure assembled the greater part of Pangea with the formation of the Ouachita-Alleghanian-Variscan orogen.

Abstract From the Permian onwards, the Gondwana‐derived Iran Plate drifted northward to collide with Eurasia in the Late Triassic, thereby closing the Palaeotethys. This Eo‐Cimmerian Orogeny formed the Cimmeride fold‐and‐thrust belt. The Upper Triassic–Middle Jurassic Shemshak Group of northern Iran is commonly regarded as the Cimmerian foreland molasse. However, our tectono‐stratigraphic analysis of the Shemshak Group resulted in a revised and precisely dated model for the Triassic–Jurassic geodynamic evolution of the Iran Plate: initial Cimmerian collision started in the Carnian with subsequent Late Triassic synorogenic peripheral foreland deposition (flysch, lower Shemshak Group). Subduction shifted south in the Norian (onset of Neotethys subduction below Iran) and slab break‐off around the Triassic–Jurassic boundary caused rapid uplift of the Cimmerides followed by Liassic post‐orogenic molasse (middle Shemshak Group). During the Toarcian–Aalenian (upper Shemshak Group), Neotethys back‐arc rifting formed a deep‐marine basin, which developed into the oceanic South Caspian Basin during the Late Bajocian–Late Jurassic.

Abstract The last species list of the European herpetofauna was published by Speybroeck, Beukema and Crochet (2010). In the meantime, ongoing research led to numerous taxonomic changes, including the discovery of new species-level lineages as well as reclassifications at genus level, requiring significant changes to this list. As of 2019, a new Taxonomic Committee was established as an official entity within the European Herpetological Society, Societas Europaea Herpetologica (SEH). Twelve members from nine European countries reviewed, discussed and voted on recent taxonomic research on a case-by-case basis. Accepted changes led to critical compilation of a new species list, which is hereby presented and discussed. According to our list, 301 species (95 amphibians, 15 chelonians, including six species of sea turtles, and 191 squamates) occur within our expanded geographical definition of Europe. The list includes 14 non-native species (three amphibians, one chelonian, and ten squamates).

Abstract The replacement of the late Precambrian Ediacaran biota by morphologically disparate animals at the beginning of the Phanerozoic was a key event in the history of life on Earth, the mechanisms and the time‐scales of which are not entirely understood. A composite section in Namibia providing biostratigraphic and chemostratigraphic data bracketed by radiometric dating constrains the Ediacaran–Cambrian boundary to 538.6–538.8 Ma, more than 2 Ma younger than previously assumed. The U–Pb‐ CA ‐ ID TIMS zircon ages demonstrate an ultrashort time frame for the LAD of the Ediacaran biota to the FAD of a complex, burrowing Phanerozoic biota represented by trace fossils to a 410 ka time window of 538.99 ± 0.21 Ma to 538.58 ± 0.19 Ma. The extremely short duration of the faunal transition from Ediacaran to Cambrian biota within less than 410 ka supports models of ecological cascades that followed the evolutionary breakthrough of increased mobility at the beginning of the Phanerozoic.

Tropical mountains are hotspots of biodiversity, but the factors that generate this high diversity remain poorly understood. To identify possible mechanisms that influence avian species assemblages in the tropical Andes, we studied the functional and phylogenetic diversity and the structure of species assemblages of an avian feeding guild. We analysed how functional and phylogenetic diversity, structure and composition of frugivorous bird assemblages changed along a 3300 m elevational transect from the lowlands to the tree line with a novel combination of functional and phylogenetic approaches, and used null models to infer possible drivers of the observed patterns. Species richness, functional richness and phylogenetic diversity decreased almost monotonically with increasing elevation, but assemblage structure and composition changed abruptly in the Andean foothills at around 1200 m. In the lowland assemblages, species were functionally and phylogenetically less similar than expected from null models, whereas species in the highland assemblages were functionally and phylogenetically more similar than expected by chance, suggesting an abrupt reduction in the number of functionally and phylogenetically distinct species in the transition from lowlands to the highlands. Nevertheless, the functional and phylogenetic evenness of the assemblages, i.e. the regularity of the spacing of species in functional trait space and phylogeny, remained constant along the gradient, which suggests that the mechanisms that influence the co‐occurrence of species within the assemblages are similar in lowlands and highlands. The observed differences between lowland and highland assemblages imply sharp distributional limits for frugivorous bird species in the Andean foothills, probably caused by environmental factors other than climate, e.g. changes in habitat types or topography, or independent species radiations in lowlands and highlands. These strong distributional limits may hinder uphill range shifts of frugivorous bird species, and the plant species they disperse, in the tropical Andes as a response to climate change.

The geological record encodes the relationship between climate and atmospheric carbon dioxide (CO 2 ) over long and short timescales, as well as potential drivers of evolutionary transitions. However, reconstructing CO 2 beyond direct measurements requires the use of paleoproxies and herein lies the challenge, as proxies differ in their assumptions, degree of understanding, and even reconstructed values. In this study, we critically evaluated, categorized, and integrated available proxies to create a high-fidelity and transparently constructed atmospheric CO 2 record spanning the past 66 million years. This newly constructed record provides clearer evidence for higher Earth system sensitivity in the past and for the role of CO 2 thresholds in biological and cryosphere evolution.

A new insect order, Mantophasmatodea, is described on the basis of museum specimens of a new genus with two species: Mantophasma zephyra gen. et sp. nov. (one female from Namibia) and M. subsolana sp. nov. (one male from Tanzania). This is the first time since 1914 that a newly described extant insect taxon has proved unplaceable within a recognized order. Mantophasmatodeans are apterous carnivores. Their closest phylogenetic relationships may be to Grylloblattodea (ice-crawlers) and/or Phasmatodea (stick insects), but the morphological evidence is ambiguous. Raptophasma Zompro from Baltic amber is assigned to the Mantophasmatodea, revealing a wider previous range for the lineage.

The phylogeny and phylogeography of Emys orbicularis was inferred from mitochondrial nucleotide sequences of the cytochrome b gene analysed by DNA sequencing and RNA heteroduplex analysis. Within the family Emydidae the monotypic genus Emys is affiliated with the nearctic taxa Emydoidea blandingii and Clemmys marmorata. The analysis of 423 individuals of E. orbicularis, originating throughout its distribution range, revealed a remarkable intraspecific differentiation in 20 different haplotypes with distinct geographical ranges. Maximum parsimony analysis produced a star-like phylogeny with seven main lineages which may reflect separations in the late Pliocene. The haplotype distribution examined by partial Mantel tests and analysis of molecular variance revealed a substantial effect of glacial periods. This historical perspective suggests the existence of multiple glacial refugia and considerable Holocene range expansion which was modulated by climatic traits. Further support is gained for the occurrence of long-term parapatry in glacial refugia.

Abstract Aim Functional relationships between species groups on macroecological scales have often been inferred from comparisons of species numbers across space. On large spatial scales, however, it is difficult to assess whether correlations of species numbers represent actual functional relationships. Here, we investigated the functional relationship between a feeding guild (fruit‐eating birds) and its resource (fleshy‐fruited plants) by studying the matching of their functional traits across spatial scales, from individual interactions to regional patterns. Location A 3000‐m elevational gradient in the tropical A ndes. Methods We sampled plant–bird interactions at two sites along the elevational gradient, and using multivariate statistics (fourth‐corner analysis) we identified corresponding morphological traits of birds and plants that influenced which bird species fed from which plant species. We then tested whether the functional trait diversities of the bird species assemblages matched those of the plant species assemblages along the elevational gradient. Results Corresponding functional traits of birds and plants were closely and significantly correlated on the scale of individual plant–bird interactions. On the regional scale, the functional diversities, but not species numbers, of bird and plant assemblages correlated significantly along the elevational gradient. Main conclusions The analysis of species interaction networks with multivariate statistics was a powerful tool for identifying relationships between functional traits of interacting species. The close functional relationships between birds and plants on the scale of individual interactions and on the regional scale show that comparisons of functional trait diversities, based on matching traits of interacting species, are better suited than correlations of species numbers to reveal the mechanisms behind large‐scale diversity patterns of interacting species. The identification of functional interdependences between interacting species on large spatial scales will be important for improving predictive models of species distributions in space and time.

Recent hypotheses on the phylogeny of the Oniscidea are summarized. The position of the Oniscidea in the phylogenetic system of the Isopoda is discussed. Within the Oniscidea, phylogenetic relationships are considered mainly down to „family“ level. Well founded monophyletic clades are discussed and unresolved and problematic regions are pointed out. A list of probable autapomorphies is given for each taxon. The knowledge on the fossil record of Oniscidea is reviewed briefly. Finally it is concluded that we need phylogenetic analyses down to species level in order to construe a robust phylogeny hypothesis for higher oniscidean taxa. An indispensable requirement for this is taxonomic revisions.