Southern Scientific Center

We present here the results of calibrating and validating a three-band model and, its special case, a two-band model, which use MEdium Resolution Imaging Spectrometer (MERIS) reflectances in the red and near-infrared spectral regions for estimating chlorophyll- <i xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">a</i> (chl- <i xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">a</i> ) concentration in inland, estuarine, and coastal turbid productive waters. During four data collection campaigns in 2008 and one campaign in 2009 in the Taganrog Bay and the Azov Sea, Russia, water samples were collected, and concentrations of chl- <i xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">a</i> and total suspended solids were measured in the laboratory. The data collected in 2008 were used for model calibration, and the data collected in 2009 were used for model validation. The models were applied to MERIS images acquired within two days from the date of <i xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">in situ</i> data collection. Two different atmospheric correction procedures were considered for processing the MERIS images. The results illustrate the high potential of the models to estimate chl- <i xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">a</i> concentration in turbid productive (Case II) waters in real time from satellite data, which will be of immense value to scientists, natural resource managers, and decision makers involved in managing the inland and coastal aquatic ecosystems.

The Pontocaspian (Black Sea - Caspian Sea) region has a very dynamic history of basin development and biotic evolution. The region is the remnant of a once vast Paratethys Sea. It contains some of the best Eurasian geological records of tectonic, climatic and paleoenvironmental change. The Pliocene-Quaternary co-evolution of the Black Sea-Caspian Sea is dominated by major changes in water (lake and sea) levels resulting in a pulsating system of connected and isolated basins. Understanding the history of the region, including the drivers of lake level and faunal evolution, is hampered by indistinct stratigraphic nomenclature and contradicting time constraints for regional sedimentary successions. In this paper we review and update the late Pliocene to Quaternary stratigraphic framework of the Pontocaspian domain, focusing on the Black Sea Basin, Caspian Basin, Marmara Sea and the terrestrial environments surrounding these large, mostly endorheic lake-sea systems.

We present and discuss here the results of our work using MODIS (moderate resolution imaging spectroradiometer) and MERIS (medium resolution imaging spectrometer) satellite data to estimate the concentration of chlorophyll-a (chl-a) in reservoirs of the Dnieper River and the Sea of Azov, which are typical case II waters, i.e., turbid and productive. Our objective was to test the potential of satellite remote sensing as a tool for near-real-time monitoring of chl-a distribution in these water bodies. We tested the performance of a recently developed three-band model, and its special case, a two-band model, which use the reflectance at red and near-infrared wavelengths for the retrieval of chl-a concentration. The higher spatial resolution and the availability of a spectral band at around 708 nm with the MERIS data offered great promise for these models. We compared results from several different atmospheric correction procedures available for MODIS and MERIS data. No one particular procedure was consistently and systematically better than the rest. Nevertheless, even in the absence of a perfect atmospheric correction procedure, both the three-band and the two-band models showed promising results when compared with in situ chl-a measurements. The challenges and limitations involved in satellite remote monitoring of the chl-a distribution in turbid productive waters are discussed.

Novel species of fungi described in this study include those from various countries as follows: Australia , Chaetomella pseudocircinoseta and Coniella pseudodiospyri on Eucalyptus microcorys leaves, Cladophialophora eucalypti , Teratosphaeria dunnii and Vermiculariopsiella dunnii on Eucalyptus dunnii leaves, Cylindrium grande and Hypsotheca eucalyptorum on Eucalyptus grandis leaves, Elsinoe salignae on Eucalyptus saligna leaves, Marasmius lebeliae on litter of regenerating subtropical rainforest, Phialoseptomonium eucalypti (incl. Phialoseptomonium gen. nov.) on Eucalyptus grandis × camaldulensis leaves, Phlogicylindrium pawpawense on Eucalyptus tereticornis leaves, Phyllosticta longicauda as an endophyte from healthy Eustrephus latifolius leaves, Pseudosydowia eucalyptorum on Eucalyptus sp. leaves, Saitozyma wallum on Banksia aemula leaves, Teratosphaeria henryi on Corymbia henryi leaves. Brazil , Aspergillus bezerrae , Backusella azygospora , Mariannaea terricola and Talaromyces pernambucoensis from soil, Calonectria matogrossensis on Eucalyptus urophylla leaves, Calvatia brasiliensis on soil, Carcinomyces nordestinensis on Bromelia antiacantha leaves, Dendryphiella stromaticola on small branches of an unidentified plant, Nigrospora brasiliensis on Nopalea cochenillifera leaves, Penicillium alagoense as a leaf endophyte on a Miconia sp., Podosordaria nigrobrunnea on dung, Spegazzinia bromeliacearum as a leaf endophyte on Tilandsia catimbauensis , Xylobolus brasiliensis on decaying wood. Bulgaria , Kazachstania molopis from the gut of the beetle Molops piceus . Croatia , Mollisia endocrystallina from a fallen decorticated Picea abies tree trunk. Ecuador , Hygrocybe rodomaculata on soil. Hungary , Alfoldia vorosii (incl. Alfoldia gen. nov.) from Juniperus communis roots, Kiskunsagia ubrizsyi (incl. Kiskunsagia gen. nov.) from Fumana procumbens roots. India , Aureobasidium tremulum as laboratory contaminant, Leucosporidium himalayensis and Naganishia indica from windblown dust on glaciers. Italy , Neodevriesia cycadicola on Cycas sp. leaves, Pseudocercospora pseudomyrticola on Myrtus communis leaves, Ramularia pistaciae on Pistacia lentiscus leaves, Neognomoniopsis quercina (incl. Neognomoniopsis gen. nov.) on Quercus ilex leaves. Japan , Diaporthe fructicola on Passiflora edulis × P . edulis f. flavicarpa fruit, Entoloma nipponicum on leaf litter in a mixed Cryptomeria japonica and Acer spp. forest. Macedonia , Astraeus macedonicus on soil. Malaysia , Fusicladium eucalyptigenum on Eucalyptus sp. twigs, Neoacrodontiella eucalypti (incl. Neoacrodontiella gen. nov.) on Eucalyptus urophylla leaves. Mozambique , Meliola gorongosensis on dead Philenoptera violacea leaflets. Nepal , Coniochaeta dendrobiicola from Dendriobium lognicornu roots. New Zealand , Neodevriesia sexualis and Thozetella neonivea on Archontophoenix cunninghamiana leaves. Norway , Calophoma sandfjordenica from a piece of board on a rocky shoreline, Clavaria parvispora on soil, Didymella finnmarkica from a piece of Pinus sylvestris driftwood. Poland , Sugiyamaella trypani from soil. Portugal , Colletotrichum feijoicola from Acca sellowiana. Russia , Crepidotus tobolensis on Populus tremula debris, Entoloma ekaterinae , Entoloma erhardii and Suillus gastroflavus on soil, Nakazawaea ambrosiae from the galleries of Ips typographus under the bark of Picea abies. Slovenia , Pluteus ludwigii on twigs of broadleaved trees. South Africa , Anungitiomyces stellenboschiensis (incl. Anungitiomyces gen. nov.) and Niesslia stellenboschiana on Eucalyptus sp. leaves, Beltraniella pseudoportoricensis on Podocarpus falcatus leaf litter, Corynespora encephalarti on Encephalartos sp. leaves, Cytospora pavettae on Pavetta revoluta leaves, Helminthosporium erythrinicola on Erythrina humeana leaves, Helminthosporium syzygii on a Syzygium sp. barkcanker, Libertasomyces aloeticus on Aloe sp. leaves, Penicillium lunae from Musa sp. fruit, Phyllosticta lauridiae on Lauridia tetragona leaves, Pseudotruncatella bolusanthi (incl. Pseudotruncatellaceae fam. nov.) and Dactylella bolusanthi on Bolusanthus speciosus leaves. Spain , Apenidiella foetida on submerged plant debris, Inocybe grammatoides on Quercus ilex subsp. ilex forest humus, Ossicaulis salomii on soil, Phialemonium guarroi from soil. Thailand , Pantospora chromolaenae on Chromolaena odorata leaves. Ukraine , Cadophora helianthi from Helianthus annuus stems. USA , Boletus pseudopinophilus on soil under slash pine, Botryotrichum foricae , Penicillium americanum and Penicillium minnesotense from air. Vietnam , Lycoperdon vietnamense on soil. Morphological and culture characteristics are supported by DNA barcodes.

Since its discovery within a travertine quarry, the fragmentary cranium of the only known Turkish Homo erectus, the Kocabaş hominid, has led to conflicting biochronological estimations. First estimated to be ∼500ka old, the partial skull presents a combination of archaic and evolved features that puts it as an intermediate specimen between the Dmanisi fossils (Homo georgicus) and the Chinese Zhoukoudian skulls (Homo erectus) respectively dated to 1.8 to ∼0.8Ma. Here we present a multidisciplinary study combining sedimentological, paleontological and paleoanthropological observations together with cosmogenic nuclide concentration and paleomagnetic measurements to provide an absolute chronological framework for the Upper fossiliferous Travertine unit where the Kocabaş hominid and fauna were discovered. The 26Al/10Be burial ages determined on pebbles from conglomeratic levels framing the Upper fossiliferous Travertine unit, which exhibits an inverse polarity, constrains its deposition to before the Cobb Mountain sub-chron, that is between 1.22 and ∼1.5Ma. The alternative match of the normal polarity recorded above the travertine with the Jaramillo subchron (lower limit 1.07 Ma) may also be marginally compatible with cosmogenic nuclides interpretation, thus the proposed minimum age of 1.1 Ma for the end of massive travertine deposition. The actual age of the fossils is likely to be in the 1.1–1.3 Ma range. This absolute date is in close agreement with the paleoanthropological conclusions based on morphometric comparisons implying that Kocabaş hominid belongs to the Homo erectus s.l. group that includes Chinese and African fossils, and is different from Middle and Upper Pleistocene specimens. Furthermore, this date is confirmed by the large mammal assemblage, typical of the late Villafranchian. Because it attests to the antiquity of human occupation of the Anatolian Peninsula and one of the waves of settlements out of Africa, this work challenges the current knowledge of the Homo erectus dispersal over Eurasia.

Data on molecular design of various types of mononuclear complexes of Schiff bases are generalized. Factors for variation of fine structure of Schiff-base ligand systems (metallocycle sizes and their number, nature of donor centers, aldehyde and amine fragments, co-ligands) are examined. A systematization of Salen complexes is offered. Electronic configurations of p- and d-metals in the coordination and organometallic compounds are taken into account in a series of chelate structures. Non-standard structures are emphasized, including various ligand chelates and molecular complexes.

We present here the results of chlorophyll-a (chl-a) concentration estimation using the red and near infrared (NIR) spectral bands of a Hyperspectral Imager for the Coastal Ocean (HICO) in productive turbid waters of the Azov Sea, Russia. During the data collection campaign in the summer of 2010 in Taganrog Bay and the Azov Sea, water samples were collected and concentrations of chl-a were measured analytically. The NIR–red models were tuned to optimize the spectral band selections and chl-a concentrations were retrieved from HICO data. The NIR–red three-band model with HICO-retrieved reflectances at wavelengths 684, 700, and 720 nm explained more than 85% of chl-a concentration variation in the range from 19.67 to 93.14 mg m − 3 and was able to estimate chl-a with root mean square error below 10 mg m − 3. The results indicate the high potential of HICO data to estimate chl-a concentration in turbid productive (Case II) waters in real-time, which will be of immense value to scientists, natural resource managers, and decision makers involved in managing the inland and coastal aquatic ecosystems.

Biochar is considered as a potential substitute for soil organic matter (SOM). Considering the importance of biochar, the present review is based on the different benefits and potential risks of the application of biochar to the soil. Biochar addition to low organic carbon soils can act as a feasible solution to keep soil biologically active for the cycling of different nutrients. The application of biochar could improve soil fertility, increase crop yield, enhance plant growth and microbial abundance, and immobilize different contaminants in the soil. It could also be helpful in carbon sequestration and the return of carbon stock back to the soil in partially combusted form. Due to the large surface area of biochar, which generally depends upon the types of feedstock and pyrolysis conditions, it helps to reduce the leaching of fertilizers from the soil and supplies additional nutrients to growing crops. However, biochar may have some adverse effects due to emissions during the pyrolysis process, but it exerts a positive priming effect (a phenomenon in which subjection to one stimulus positively influences subsequent stimulus) on SOM decomposition, depletion of nutrients (macro- and micro-) via strong adsorption, and impact on soil physicochemical properties. In view of the above importance and limitations, all possible issues related to biochar application should be considered. The review presents extensive detailed information on the sustainable approach for the environmental use of biochar and its limitations.

For effective soil remediation, it is vital to apply environmentally friendly and cost-effective technologies following the notion of green sustainable development. In the context of recycling waste and preserving nutrients in the soil, biochar production and utilization have become widespread. There is an urgent need to develop high-efficiency biochar-based sorbents for pollution removal from soil. This research examined the efficacy of soil remediation using biochar made from three distinct sources: wood, and agricultural residues (sunflower and rice husks). The generated biochars were characterized by SEM/SCEM, XRF, XRD, FTIR, BET Specific Surface Area, and elemental compositions. The presence of hydroxyl and phenolic functional groups and esters in wood, sunflower and rice husk biochar were noted. The total volume of pores was in the following descending order: rice husk > wood > sunflower husk. However, wood biochar had more thermally stable, heterogeneous, irregular-shaped pores than other samples. Adsorption of soil-heavy metals into biochars differed depending on the type of adsorbent, according to data derived from distribution coefficients, sorption degree, Freundlich, and Langmuir adsorption models. The input of biochars to Calcaric Fluvic Arenosol increased its adsorption ability under contamination by Cu(II), Zn(II), and Pb(II) in the following order: wood > rice husk > sunflower husk. The addition of sunflower husk, wood, and rice husk biochar to the soil led to an increase in the removal efficiency of metals in all cases (more than 77%). The increase in the percentage adsorption of Cu and Pb was 9-19%, of Zn was 11-21%. The present results indicated that all biochars functioned well as an absorbent for removing heavy metals from soils. The tailor-made surface chemistry properties and the high sorption efficiency of the biochar from sunflower and rice husks could potentially be used for soil remediation.

Modern concepts of mechanisms of thermal and photochemical rearrangements responsible for the photochromic properties of spiropyrans, spirooxazines, spiroperimidines and metal bis(chelate) complexes have been considered. The most important applications of spiropyrans and spirooxazines as light-controlled molecular switches of physical and biological properties of hybrid molecular and supramolecular structures and macroscopic materials have been discussed. The bibliography includes 185 references.

We present area‐averaged time series of temperature for the 100–150 m depth layer of the Barents Sea from 1900 through 2006. This record is dominated by multidecadal variability on the order of 4°C which is correlated with the Atlantic Multidecadal Oscillation Index.

A series of organotin complexes with Sn-S bonds of formulae Me2Sn(SR)2 (1); Et2Sn(SR)2 (2); (n-Bu)2Sn(SR)2 (3); Ph2Sn(SR)2 (4); R2Sn(SR)2 (5); Me3SnSR (6); Ph3SnSR (7) (R = 3,5-di-tert-butyl-4-hydroxyphenyl) were synthesized and characterized by elemental analysis, (1)H, (13)C NMR, and IR. The crystal structures of compounds 1, 4, 5, and 7 were determined by X-ray diffraction analysis. The tetrahedral geometry around the Sn center in the monocrystals of 1, 4, 5, and 7 was confirmed by X-ray crystallography. The high radical scavenging activity of the complexes was confirmed spectrophotometrically in a DPPH-test. The binding affinity of 1-7 and the starting R2SnCl2 (8) towards tubulin through their interaction with SH groups of proteins was studied. It was found that the hindered organotin complexes could interact with the colchicine site of tubulin, which makes them promising antimitotic drugs. Compounds 1-8 were tested for their in vitro cytotoxicity against human breast (MCF-7) and human cervix (HeLa) adenocarcinoma cells. Complexes 1-8 were also tested against normal human fetal lung fibroblast cells (MRC-5). Complexes 2-4 and 8 exhibit significantly lower cytostatic activity against the normal MRC-5 cell line compared to the tumor cell lines MCF-7 and HeLa used. A high activity against both cell lines 250 nM (MCF-7) and 160 nM (HeLa) was determined for the triphenyltin complex 7 while the introduction of hindered phenol groups decreases the cytotoxicity of the complexes against normal cells.

Within the framework of this study, the effect of nanoparticles of the essential trace element selenium stabilized by Polyvinylpirrolidone (PVP) C15 (8 ± 2 kDa) and ascorbic acid on the germination of barley seeds has been studied. Selenium nanoparticles stabilized by PVP C15 (8 ± 2 kDa) and ascorbic acid, characterized by a spherical shape, monodisperse size distribution, and a diameter of about 70 ± 5 nm, were obtained by the chemical reduction method. The experiment compared the effect of selenium nanoparticles and selenous acid on seed germination. The positive effect of preparation of selenium nanoparticles stabilized by PVP C15 (8 ± 2 kDa) and ascorbic acid on the length of roots and shoots, the number of roots, and the percentage of seed germination has been revealed. It was determined that the highest percentage of Hordeum vulgare L. culture seed germination was achieved using a preparation of selenium nanoparticles stabilized by PVP C15 (8 ± 2 kDa) and ascorbic acid at a concentration of of 4.65 µg/mL. Analysis of the results showed that selenium in the form of nanoparticles has an order of magnitude that is less toxic than in the form of selenous acid. The study of morphological and functional parameters during the germination of Hordeum vulgare L. seeds allowed us to conclude that selenium nanoparticles can be successfully used in agronomy and agriculture to provide plants with the essential microelement selenium, which is necessary for the normal growth and development of crops.

Abstract This paper addresses the problem of reflection and transmission of compression waves at the phase transition layer between the vapour and liquid phases of the same fluid. Within the framework of second gradient fluid modeling, we use a non‐convex free energy in order to describe the phase transition phenomenon. A stationary solution for the fluid density is found for an infinite domain, and an analytical expression for the phase transition is presented. Then the propagation of linear waves superposed to this stationary solution is discussed, with particular attention to the behaviour in correspondence of the interfacial layer. The reflection and transmission of waves is studied and analized with the aid of numerical simulations, and an interesting phenomenon of mass adsorption at the interface is observed and discussed.

The resultant, two-dimensional thermomechanics of shells undergoing diffusionless, displacive phase transitions of martensitic type of the shell material is developed. In particular, we extend the resultant surface entropy inequality by introducing two temperature fields on the shell base surface: the referential mean temperature and its deviation, with corresponding dual fields: the referential entropy and its deviation. Additionally, several extra surface fields related to the deviation fields are introduced to assure that the resultant surface entropy inequality be direct implication of the entropy inequality of continuum thermomechanics. The corresponding constitutive equations for thermoelastic and thermoviscoelastic shells of differential type are worked out. Within this formulation of shell thermomechanics, we also derive the thermodynamic continuity condition along the curvilinear phase interface and propose the kinetic equation allowing one to determine position and quasistatic motion of the interface relative to the base surface. The theoretical model is illustrated by two axisymmetric numerical examples of stretching and bending of the circular plate undergoing phase transition within the range of small deformations.

The stability of RNA is a critical factor in determining its functionality and degradation in the cell. In recent years, it has been shown that the stability of RNA depends on a complex interaction of external and internal factors. External conditions, such as temperature fluctuations, the level of acidity of the environment, the presence of various substances and ions, as well as the effects of oxidative stress, can change the structure of RNA and affect its stability. Internal factors, including the specific structural features of RNA and its interactions with protein molecules, also have a significant impact on the regulation of the stability of these molecules. In this article, we review the main factors influencing RNA stability, since understanding the factors influencing this extremely complex process is important not only for understanding the regulation of expression at the RNA level but also for developing new methods for isolating and stabilizing RNA in preparation for creating biobanks of genetic material. We reviewed a modern solution to this problem and formulated basic recommendations for RNA storage aimed at minimizing degradation and damage to the molecule.

Three‐layer laminates with thin soft core layer can be found in many engineering applications. Examples include laminated glasses and photovoltaic panels. For such structures high contrast in the mechanical properties of faces and core requires the use of advanced methods to determine effective material properties of the laminate. In this paper we address the application of the first order shear deformation plate theory to the analysis of laminates with thin and soft core layer. In particular, transverse shear stiffness parameters for three‐layered plates with different symmetric configurations are analyzed. For classical sandwiches with thick core layer the result coincides with the Reissner's formula. For the case of thin and compliant core layer the new expression for the effective shear stiffness is derived.

Abstract. The northern Eurasian regions and Arctic Ocean will very likely undergo substantial changes during the next decades. The Arctic–boreal natural environments play a crucial role in the global climate via albedo change, carbon sources and sinks as well as atmospheric aerosol production from biogenic volatile organic compounds. Furthermore, it is expected that global trade activities, demographic movement, and use of natural resources will be increasing in the Arctic regions. There is a need for a novel research approach, which not only identifies and tackles the relevant multi-disciplinary research questions, but also is able to make a holistic system analysis of the expected feedbacks. In this paper, we introduce the research agenda of the Pan-Eurasian Experiment (PEEX), a multi-scale, multi-disciplinary and international program started in 2012 (https://www.atm.helsinki.fi/peex/). PEEX sets a research approach by which large-scale research topics are investigated from a system perspective and which aims to fill the key gaps in our understanding of the feedbacks and interactions between the land–atmosphere–aquatic–society continuum in the northern Eurasian region. We introduce here the state of the art for the key topics in the PEEX research agenda and present the future prospects of the research, which we see relevant in this context.

The problem of bending of a nanosize plate, taking into account the action of the surface effects, is considered, and the influence of surface tension on the effective stiffness of nanosize plates is found. The deformation of a linearly elastic body is considered and the action of the surface effects on the upper and lower surfaces are taken into account. An approximation for the field of displacements that is linear in thickness is assumed to describe the deformations of the plates. The equations of state allows the determination of the equilibrium equations for the plate, with the surface tension being taken into account, in terms of the displacements and rotations. The dependence of the transverse shear forces and momentum tensors on deformations is defined by the four elastic constant.

The study focuses on in vitro tracing of some fundamental changes that emerge in teeth at the initial stage of caries development using multiple approaches. The research was conducted on a mostly sound maxillary molar tooth but with a clearly visible natural proximal white spot lesion (WSL). Values of mineral density, reduced Young's modulus, indentation hardness and creep as well as the molecular composition and surface microstructure of the WSL and bordering dentine area were studied. The results obtained were compared to those of sound enamel and dentine on the same tooth. A decrease of mechanical properties and mineral density both for the WSL and bordering dentine was detected in comparison to the sound counterparts, as well as increase of creep for the enamel WSL. Differences in molecular composition and surface microstructure (including the indenter impressions) were found and described. WSL induces a serious change in the state of not only the visually affected enamel but also surrounding visually intact enamel and dentine in its vicinity. The results provide the basis for future studies of efficacy of minimal invasive treatments of caries.