High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory
Published in 2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) • May 1, 2022
NobleIDNI8P59W26R93S70
Authors:,,
Safaa Diab
Amir Nassereldine
Mohammed Alser
Abstract
We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.
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