github.com/iwc-workflows/chipseq-pe/main
Published in Zenodo (CERN European Organization for Nuclear Research) • Mar 24, 2025
NobleIDNI9P44W42R00S66
Authors:
Lucille Lopez-Delisle
Abstract
Complete ChIP-seq analysis for paired-end sequencing data. Processes raw FASTQ files through adapter removal (cutadapt), alignment to reference genome (Bowtie2), and stringent quality filtering (MAPQ >= 30, concordant pairs only). Peak calling with MACS2 optimized for paired-end reads identifies pro...
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