Research indexDataset
FastAAI Codebase
Gerhardt, Ruiz-Perez, Konstantinidis and 1 other
Figshare1 Jan 2025Open access
DatasetOpen accessFrom the research index
FastAAI Codebase
Gerhardt, Ruiz-Perez, Konstantinidis and 1 other · Figshare · 1 Jan 2025
Abstract
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FastAAI is an ultrafast estimator of whole-genome aggregate amino acid identity (AAI). FastAAI utilizes tetramer similarities across matched pairs of marker genes to estimate AAI in a computationally simple manner, achieving orders of magnitude speedup over alignment and phylogenetic approaches with a minimal lack of accuracy.