github.com/aofarrel/tree_nine/tree_nine
Published in Zenodo (CERN European Organization for Nuclear Research) • Mar 24, 2025
NobleIDNI0P44W55R32S28
Authors:
Ash O'Farrell
Abstract
# Tree Nine Put diff files on an existing phylogenetic tree using [UShER](https://www.nature.com/articles/s41588-021-00862-7)'s `usher sampled` task with a bit of help from [SRANWRP](https://www.github.com/aofarrel/SRANWRP), followed by conversion of that tree to Taxonium, Newick, and Nextstrain for...
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