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Metabarcoding data processing using dada2 - rbcL

Published in Zenodo (CERN European Organization for Nuclear Research) • Oct 19, 2023
NobleIDNI5P06W71R85S56
Authors:
Davis Fray
,
Callahan McGovern
,
Dale Casamatta

Abstract

Using the code in this file, we will process rbcL metabarcoding data using the Dada2 pipeline. (DATA REDUCTION STAGE). Our goal is to remove primers, and then use the DADA2 algorithm to assess read quality, denoise, and merge our sequences. Finally, we will assign our sequences to ASVs and assign th...

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