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Infiltration Score Code

Published in Zenodo (CERN European Organization for Nuclear Research) • Sep 18, 2024
NobleIDNI4P02W56R18S83
Authors:
Gurkan Mollaoglu
,
Noam Rabinovich
,
Jaime Mateus-Tique

Abstract

Cell segmentation output from multiplexed imaging analysis can be further processed for infiltration score calculation using this Java code. For each cell type of interest, staining markers and desired thresholds for each marker are defined in the "Config" input Excel file. For selected cell types (...

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