github.com/aofarrel/tree_nine/matUtils_optimize
Published in Zenodo (CERN European Organization for Nuclear Research) • Dec 31, 2025
NobleIDNI4P36W93R82S36
Authors:
Ash O'Farrell
Abstract
Tree Nine Put diff files on an existing phylogenetic tree using UShER's usher sampled task with a bit of help from SRANWRP, followed by conversion of that tree to Taxonium, Newick, and Nextstrain formats. Samples' SNP distance is calculated and output as a distance matrix, and samples will be placed...
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