github.com/aofarrel/tree_nine/matUtils_extract
Published in Zenodo (CERN European Organization for Nuclear Research) • Feb 20, 2026
NobleIDNI9P465W904R833S064
Authors:
Ash O'Farrell
Abstract
Extract This workflow uses matUtils extract to extract a subtree from an UShER-formatted protobuff (.pb) phylogenetic tree. The samples_in_subtree file must have the name of each sample that is to go into the subtree, one sample per line.
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