Efficient "pythonic" access to FASTA files using pyfaidx
Published • Apr 8, 2015
Authors:,,
Matthew D Shirley
Zhaorong Ma
Brent S Pedersen
Abstract
The pyfaidx Python module provides memory and time-efficient indexing, subsetting, and in-place modification of subsequences of FASTA files. pyfaidx provides Python classes that expose a dictionary interface where sequences from an indexed FASTA can be accessed by their header name and then sliced b...
Finding related papers...
Discussions
(0)No comments yet
Be the first to share your thoughts!