Genomics and Phylogenetic Studies — Research Topic | NobleBlocks | NobleBlocks

Genomics and Phylogenetic Studies

Top publications in Genomics and Phylogenetic Studies across the NobleBlocks index. Open any paper for its abstract, citations, and AI-generated take.

Indexed papers

4.7K

Total citations

14.3K

Latest paper

2026

Papers per year (last 17 years) — click a bar to see papers from that year

20102026

Top papers

Application of Phylogenetic Networks in Evolutionary Studies

Daniel H. Huson, David Bryant

2005· Molecular Biology and Evolution7.3K

OrthoFinder: phylogenetic orthology inference for comparative genomics

David M. Emms, Steven Kelly

2019· Genome Biology6.8K

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

2014· Bioinformatics29.5K

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark, Daniel L. Ayres +6 more

2012· Systematic Biology24.0K

MrBayes 3: Bayesian phylogenetic inference under mixed models

Fredrik Ronquist, John P. Huelsenbeck

2003· Bioinformatics21.8K

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

R I Amann, W Ludwig, K H Schleifer

1995· Microbiological Reviews19.7K

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy, Bui Quang Minh, Thomas K F Wong, Arndt von Haeseler +1 more

2017· Nature Methods16.3K

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh, Heiko A Schmidt, Olga Chernomor, Dominik Schrempf +3 more

2020· Molecular Biology and Evolution15.1K

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

2006· Bioinformatics13.6K

PAML 4: Phylogenetic Analysis by Maximum Likelihood

2007· Molecular Biology and Evolution12.5K

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

2009· Bioinformatics11.8K

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

Mark A. Miller, Wayne Pfeiffer, Terri Schwartz

jModelTest: phylogenetic model averaging.

2008· Molecular biology and evolution10.5K

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic, Peer Bork

2021· Nucleic Acids Research10.3K

16S ribosomal DNA amplification for phylogenetic study

W G Weisburg, S M Barns, D A Pelletier, D J Lane

1991· Journal of Bacteriology9.4K

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

2000· Molecular Biology and Evolution9.2K

phytools: an R package for phylogenetic comparative biology (and other things)

2011· Methods in Ecology and Evolution8.5K

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

Catherine Lozupone, Rob Knight

2005· Applied and Environmental Microbiology7.1K

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Topic snapshot

4.7K papers indexed

14.3K total citations

Latest: 2026