Single-cell and spatial transcriptomics
Top publications in Single-cell and spatial transcriptomics across the NobleBlocks index. Open any paper for its abstract, citations, and AI-generated take.
Indexed papers
278.9K
Total citations
60.7K
Latest paper
2026
Top papers
Fast, sensitive and accurate integration of single-cell data with Harmony.
Ilya Korsunsky, Nghia Millard, Jean Fan, Kamil Slowikowski +6 more
2019· Nature methods10.5K
Best practices for single-cell analysis across modalities.
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya +9 more
2023· Nature reviews. Genetics1.1K
High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue.
Yang Liu, Mingyu Yang, Yanxiang Deng, Graham Su +12 more
2020· Cell982
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.
Tommaso Biancalani, Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi +18 more
2021· Nature methods955
Spinal cord injury: molecular mechanisms and therapeutic interventions.
Xiao Hu, Wei Xu, Yilong Ren, Zhaojie Wang +6 more
2023· Signal transduction and targeted therapy736
An atlas of healthy and injured cell states and niches in the human kidney.
Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu +46 more
2023· Nature690
Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis.
Ross Dobie, John R Wilson-Kanamori, Beth E P Henderson, James R Smith +18 more
2019· Cell reports408
Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm.
Steven Penfield, Yi Li, Alison D Gilday, Stuart Graham +1 more
2006· The Plant cell318
Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease.
Monika Piwecka, Nikolaus Rajewsky, Agnieszka Rybak-Wolf
2023· Nature reviews. Neurology313
Spatial multiomics map of trophoblast development in early pregnancy.
Anna Arutyunyan, Kenny Roberts, Kevin Troulé, Frederick C K Wong +23 more
2023· Nature290
Multiomic analysis reveals conservation of cancer-associated fibroblast phenotypes across species and tissue of origin.
Deshka S Foster, Michael Januszyk, Daniel Delitto, Kathryn E Yost +32 more
2022· Cancer cell220
Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
David W McKellar, Lauren D Walter, Leo T Song, Madhav Mantri +3 more
2021· Communications biology207
Single-cell analysis of endometriosis reveals a coordinated transcriptional programme driving immunotolerance and angiogenesis across eutopic and ectopic tissues.
Yuliana Tan, William F Flynn, Santhosh Sivajothi, Diane Luo +6 more
2022· Nature cell biology203
Multi-omic profiling of clear cell renal cell carcinoma identifies metabolic reprogramming associated with disease progression.
Junyi Hu, Shao-Gang Wang, Yaxin Hou, Zhaohui Chen +27 more
2024· Nature genetics185
Single-cell atlases: shared and tissue-specific cell types across human organs.
Rasa Elmentaite, Cecilia Domínguez Conde, Lu Yang, Sarah A Teichmann
2022· Nature reviews. Genetics167
Multi-omic profiling highlights factors associated with resistance to immuno-chemotherapy in non-small-cell lung cancer.
Yilv Yan, Dongqing Sun, Junjie Hu, Yue Chen +17 more
2025· Nature genetics164
Reconstruction of the tumor spatial microenvironment along the malignant-boundary-nonmalignant axis
Zhenzhen Xun, Xinyu Ding, Yao Zhang, Benyan Zhang +7 more
2023· Nature Communications163
Spatial transcriptomics reveals discrete tumour microenvironments and autocrine loops within ovarian cancer subclones.
Elena Denisenko, Leanne de Kock, Adeline Tan, Aaron B Beasley +18 more
2024· Nature communications162
Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis.
Gerald Coulis, Diego Jaime, Christian Guerrero-Juarez, Jenna M Kastenschmidt +31 more
2023· Science advances147
Combined Single‐Cell and Spatial Transcriptomics Reveal the Metabolic Evolvement of Breast Cancer during Early Dissemination
Yi‐Ming Liu, Jing‐Yu Ge, Yu‐Fei Chen, Tong Liu +8 more
2023· Advanced Science135