Australian Research Council

Results from genome-wide association studies (GWAS) can be used to infer causal relationships between phenotypes, using a strategy known as 2-sample Mendelian randomization (2SMR) and bypassing the need for individual-level data. However, 2SMR methods are evolving rapidly and GWAS results are often insufficiently curated, undermining efficient implementation of the approach. We therefore developed MR-Base (<ext-link ext-link-type="uri" xlink:href="http://www.mrbase.org">http://www.mrbase.org</ext-link>): a platform that integrates a curated database of complete GWAS results (no restrictions according to statistical significance) with an application programming interface, web app and R packages that automate 2SMR. The software includes several sensitivity analyses for assessing the impact of horizontal pleiotropy and other violations of assumptions. The database currently comprises 11 billion single nucleotide polymorphism-trait associations from 1673 GWAS and is updated on a regular basis. Integrating data with software ensures more rigorous application of hypothesis-driven analyses and allows millions of potential causal relationships to be efficiently evaluated in phenome-wide association studies.

We present new global maps of the Köppen-Geiger climate classification at an unprecedented 1-km resolution for the present-day (1980-2016) and for projected future conditions (2071-2100) under climate change. The present-day map is derived from an ensemble of four high-resolution, topographically-corrected climatic maps. The future map is derived from an ensemble of 32 climate model projections (scenario RCP8.5), by superimposing the projected climate change anomaly on the baseline high-resolution climatic maps. For both time periods we calculate confidence levels from the ensemble spread, providing valuable indications of the reliability of the classifications. The new maps exhibit a higher classification accuracy and substantially more detail than previous maps, particularly in regions with sharp spatial or elevation gradients. We anticipate the new maps will be useful for numerous applications, including species and vegetation distribution modeling. The new maps including the associated confidence maps are freely available via www.gloh2o.org/koppen.

Distributions of Earth's species are changing at accelerating rates, increasingly driven by human-mediated climate change. Such changes are already altering the composition of ecological communities, but beyond conservation of natural systems, how and why does this matter? We review evidence that climate-driven species redistribution at regional to global scales affects ecosystem functioning, human well-being, and the dynamics of climate change itself. Production of natural resources required for food security, patterns of disease transmission, and processes of carbon sequestration are all altered by changes in species distribution. Consideration of these effects of biodiversity redistribution is critical yet lacking in most mitigation and adaptation strategies, including the United Nation's Sustainable Development Goals.

Abstract Focus group discussion is frequently used as a qualitative approach to gain an in‐depth understanding of social issues. The method aims to obtain data from a purposely selected group of individuals rather than from a statistically representative sample of a broader population. Even though the application of this method in conservation research has been extensive, there are no critical assessment of the application of the technique. In addition, there are no readily available guidelines for conservation researchers. Here, we reviewed the applications of focus group discussion within biodiversity and conservation research between 1996 and April 2017. We begin with a brief explanation of the technique for first‐time users. We then discuss in detail the empirical applications of this technique in conservation based on a structured literature review (using Scopus). The screening process resulted in 170 articles, the majority of which (67%, n = 114,) were published between 2011 and 2017. Rarely was the method used as a stand‐alone technique. The number of participants per focus group (where reported) ranged from 3 to 21 participants with a median of 10 participants. There were seven (median) focus group meetings per study. Focus group discussion sessions lasted for 90 (median) minutes. Four main themes emerged from the review: understanding of people's perspectives regarding conservation (32%), followed by the assessment of conservation and livelihoods practices (21%), examination of challenges and impacts of resource management interventions (19%) and documenting the value of indigenous knowledge systems (16%). Most of the studies were in Africa ( n = 76), followed by Asia ( n = 44), and Europe ( n = 30). We noted serious gaps in the reporting of the methodological details in the reviewed papers. More than half of the studies ( n = 101) did not report the sample size and group size ( n = 93), whereas 54 studies did not mention the number of focus group discussion sessions while reporting results. Rarely have the studies provided any information on the rationale for choosing the technique. We have provided guidelines to improve the standard of reporting and future application of the technique for conservation.

Division of Soils, Council for Scientific and Industrial Research, The Waite Institute, Adelaide, South Australia. The author is now with the Division of Industrial Chemistry, of the Council, at Melbourne, Victoria. He wishes to thank G.S. Hart for assistance with some of the laboratory work in connection with this investigation.

The term non-coding RNA (ncRNA) is commonly employed for RNA that does not encode a protein, but this does not mean that such RNAs do not contain information nor have function. Although it has been generally assumed that most genetic information is transacted by proteins, recent evidence suggests that the majority of the genomes of mammals and other complex organisms is in fact transcribed into ncRNAs, many of which are alternatively spliced and/or processed into smaller products. These ncRNAs include microRNAs and snoRNAs (many if not most of which remain to be identified), as well as likely other classes of yet-to-be-discovered small regulatory RNAs, and tens of thousands of longer transcripts (including complex patterns of interlacing and overlapping sense and antisense transcripts), most of whose functions are unknown. These RNAs (including those derived from introns) appear to comprise a hidden layer of internal signals that control various levels of gene expression in physiology and development, including chromatin architecture/epigenetic memory, transcription, RNA splicing, editing, translation and turnover. RNA regulatory networks may determine most of our complex characteristics, play a significant role in disease and constitute an unexplored world of genetic variation both within and between species.

Research that combines all available studies of biological responses to regional and global climate change shows that 81–83% of all observations were consistent with the expected impacts of climate change. These findings were replicated across taxa and oceanic basins. Past meta-analyses of the response of marine organisms to climate change have examined a limited range of locations1,2, taxonomic groups2,3,4 and/or biological responses5,6. This has precluded a robust overview of the effect of climate change in the global ocean. Here, we synthesized all available studies of the consistency of marine ecological observations with expectations under climate change. This yielded a meta-database of 1,735 marine biological responses for which either regional or global climate change was considered as a driver. Included were instances of marine taxa responding as expected, in a manner inconsistent with expectations, and taxa demonstrating no response. From this database, 81–83% of all observations for distribution, phenology, community composition, abundance, demography and calcification across taxa and ocean basins were consistent with the expected impacts of climate change. Of the species responding to climate change, rates of distribution shifts were, on average, consistent with those required to track ocean surface temperature changes. Conversely, we did not find a relationship between regional shifts in spring phenology and the seasonality of temperature. Rates of observed shifts in species’ distributions and phenology are comparable to, or greater, than those for terrestrial systems.

Tropical reef systems are transitioning to a new era in which the interval between recurrent bouts of coral bleaching is too short for a full recovery of mature assemblages. We analyzed bleaching records at 100 globally distributed reef locations from 1980 to 2016. The median return time between pairs of severe bleaching events has diminished steadily since 1980 and is now only 6 years. As global warming has progressed, tropical sea surface temperatures are warmer now during current La Niña conditions than they were during El Niño events three decades ago. Consequently, as we transition to the Anthropocene, coral bleaching is occurring more frequently in all El Niño-Southern Oscillation phases, increasing the likelihood of annual bleaching in the coming decades.

Heatwaves are important climatic extremes in atmospheric and oceanic systems that can have devastating and long-term impacts on ecosystems, with subsequent socioeconomic consequences. Recent prominent marine heatwaves have attracted considerable scientific and public interest. Despite this, a comprehensive assessment of how these ocean temperature extremes have been changing globally is missing. Using a range of ocean temperature data including global records of daily satellite observations, daily in situ measurements and gridded monthly in situ-based data sets, we identify significant increases in marine heatwaves over the past century. We find that from 1925 to 2016, global average marine heatwave frequency and duration increased by 34% and 17%, respectively, resulting in a 54% increase in annual marine heatwave days globally. Importantly, these trends can largely be explained by increases in mean ocean temperatures, suggesting that we can expect further increases in marine heatwave days under continued global warming.

Electrochemical capacitors: A hierarchical porous graphitic carbon material, composed of macroporous ion-buffering microreservoirs, ion-transporting channels, and localized graphitic wall structures, is presented (see images; top: 3D skeleton, bottom: carbon platelet). The properties of this new material combine to overcome the electrode kinetic problems normally found in electrochemical capacitors, thus resulting in an excellent high-rate energy-storage performance. Supporting information for this article is available on the WWW under http://www.wiley-vch.de/contents/jc_2002/2008/z702721_s.pdf or from the author. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

The third catalog of high-energy gamma-ray sources detected by the EGRET telescope on the Compton Gamma Ray Observatory includes data from 1991 April 22 to 1995 October 3 (Cycles 1, 2, 3, and 4 of the mission). In addition to including more data than the second EGRET catalog and its supplement, this catalog uses completely reprocessed data (to correct a number of mostly minimal errors and problems). The 271 sources (E greater than 100 MeV) in the catalog include the single 1991 solar flare bright enough to be detected as a source, the Large Magellanic Cloud, five pulsars, one probable radio galaxy detection (Cen A), and 66 high-confidence identifications of blazars (BL Lac objects, flat-spectrum radio quasars, or unidentified flat-spectrum radio sources). In addition, 27 lower-confidence potential blazar identifications are noted. Finally, the catalog contains 170 sources not yet identified firmly with known objects, although potential identifications have been suggested for a number of those. A figure is presented that gives approximate upper limits for gamma-ray sources at any point in the sky, as well as information about sources listed in the second catalog and its supplement which do not appear in this catalog.

Multilayer thin films have garnered intense scientific interest due to their potential application in diverse fields such as catalysis, optics, energy, membranes, and biomedicine. Here we review the current technologies for multilayer thin-film deposition using layer-by-layer assembly, and we discuss the different properties and applications arising from the technologies. We highlight five distinct routes of assembly—immersive, spin, spray, electromagnetic, and fluidic assembly—each of which offers material and processing advantages for assembling layer-by-layer films. Each technology encompasses numerous innovations for automating and improving layering, which is important for research and industrial applications. Furthermore, we discuss how judicious choice of the assembly technology enables the engineering of thin films with tailor-made physicochemical properties, such as distinct-layer stratification, controlled roughness, and highly ordered packing.

Knowledge of mammalian diversity is still surprisingly disparate, both regionally and taxonomically. Here, we present a comprehensive assessment of the conservation status and distribution of the world's mammals. Data, compiled by 1700+ experts, cover all 5487 species, including marine mammals. Global macroecological patterns are very different for land and marine species but suggest common mechanisms driving diversity and endemism across systems. Compared with land species, threat levels are higher among marine mammals, driven by different processes (accidental mortality and pollution, rather than habitat loss), and are spatially distinct (peaking in northern oceans, rather than in Southeast Asia). Marine mammals are also disproportionately poorly known. These data are made freely available to support further scientific developments and conservation action.

Freestanding and flexible graphene/polyaniline composite paper was prepared by an in situ anodic electropolymerization of polyaniline film on graphene paper. This graphene-based composite paper electrode, consisting of graphene/polyaniline composite sheets as building blocks, shows a favorable tensile strength of 12.6 MPa and a stable large electrochemical capacitance (233 F g(-1) and 135 F cm(-3) for gravimetric and volumetric capacitances), which outperforms many other currently available carbon-based flexible electrodes and is hence particularly promising for flexible supercapacitors.

Abstract Consolidated tables showing an extensive listing of the highest independently confirmed efficiencies for solar cells and modules are presented. Guidelines for inclusion of results into these tables are outlined, and new entries since January 2019 are reviewed.

Plate tectonic processes introduce basaltic crust (as eclogite) into the peridotitic mantle. The proportions of these two sources in mantle melts are poorly understood. Silica-rich melts formed from eclogite react with peridotite, converting it to olivine-free pyroxenite. Partial melts of this hybrid pyroxenite are higher in nickel and silicon but poorer in manganese, calcium, and magnesium than melts of peridotite. Olivine phenocrysts' compositions record these differences and were used to quantify the contributions of pyroxenite-derived melts in mid-ocean ridge basalts (10 to 30%), ocean island and continental basalts (many &gt;60%), and komatiites (20 to 30%). These results imply involvement of 2 to 20% (up to 28%) of recycled crust in mantle melting.

The ocean moderates anthropogenic climate change at the cost of profound alterations of its physics, chemistry, ecology, and services. Here, we evaluate and compare the risks of impacts on marine and coastal ecosystems—and the goods and services they provide—for growing cumulative carbon emissions under two contrasting emissions scenarios. The current emissions trajectory would rapidly and significantly alter many ecosystems and the associated services on which humans heavily depend. A reduced emissions scenario—consistent with the Copenhagen Accord's goal of a global temperature increase of less than 2°C—is much more favorable to the ocean but still substantially alters important marine ecosystems and associated goods and services. The management options to address ocean impacts narrow as the ocean warms and acidifies. Consequently, any new climate regime that fails to minimize ocean impacts would be incomplete and inadequate.

Additive manufacturing (AM), particularly Selective Laser Melting (SLM) has enabled development of lattice structures with unique properties. Through control of various parameters lattice structures can produce unique mechanical, electrical, thermal and acoustic properties, and have received much research attention. Despite the increasing volume of published data on the mechanical response of specific SLM lattice structures, there exists no overarching analysis. This work addresses this identified deficiency by providing a comprehensive summary of the experimental data reported on the mechanical response of SLM lattice structures. The design, fabrication and performance of SLM lattice structures are reviewed and the quality of data reported is analysed to inform best-practice for future studies. This comprehensive data summary enables meta-analysis of the reported mechanical performance of SLM lattice structures, providing insight into the bounds of their technical capabilities. Correlations were identified between the relative density and mechanical properties of many unit cell topologies consistent with the predictions of the Gibson-Ashby model, indicating its usefulness in describing and predicting the behaviour of SLM lattice structures. This review provides designers with a compiled resource of experimental data and design for AM tools to inform future design applications of SLM lattice structures and facilitates their further commercial adoption.

Most ecological processes now show responses to anthropogenic climate change. In terrestrial, freshwater, and marine ecosystems, species are changing genetically, physiologically, morphologically, and phenologically and are shifting their distributions, which affects food webs and results in new interactions. Disruptions scale from the gene to the ecosystem and have documented consequences for people, including unpredictable fisheries and crop yields, loss of genetic diversity in wild crop varieties, and increasing impacts of pests and diseases. In addition to the more easily observed changes, such as shifts in flowering phenology, we argue that many hidden dynamics, such as genetic changes, are also taking place. Understanding shifts in ecological processes can guide human adaptation strategies. In addition to reducing greenhouse gases, climate action and policy must therefore focus equally on strategies that safeguard biodiversity and ecosystems.

Abstract We present Multi-Source Weighted-Ensemble Precipitation, version 2 (MSWEP V2), a gridded precipitation P dataset spanning 1979–2017. MSWEP V2 is unique in several aspects: i) full global coverage (all land and oceans); ii) high spatial (0.1°) and temporal (3 hourly) resolution; iii) optimal merging of P estimates based on gauges [WorldClim, Global Historical Climatology Network-Daily (GHCN-D), Global Summary of the Day (GSOD), Global Precipitation Climatology Centre (GPCC), and others], satellites [Climate Prediction Center morphing technique (CMORPH), Gridded Satellite (GridSat), Global Satellite Mapping of Precipitation (GSMaP), and Tropical Rainfall Measuring Mission (TRMM) Multisatellite Precipitation Analysis (TMPA) 3B42RT)], and reanalyses [European Centre for Medium-Range Weather Forecasts (ECMWF) interim reanalysis (ERA-Interim) and Japanese 55-year Reanalysis (JRA-55)]; iv) distributional bias corrections, mainly to improve the P frequency; v) correction of systematic terrestrial P biases using river discharge Q observations from 13,762 stations across the globe; vi) incorporation of daily observations from 76,747 gauges worldwide; and vii) correction for regional differences in gauge reporting times. MSWEP V2 compares substantially better with Stage IV gauge–radar P data than other state-of-the-art P datasets for the United States, demonstrating the effectiveness of the MSWEP V2 methodology. Global comparisons suggest that MSWEP V2 exhibits more realistic spatial patterns in mean, magnitude, and frequency. Long-term mean P estimates for the global, land, and ocean domains based on MSWEP V2 are 955, 781, and 1,025 mm yr −1 , respectively. Other P datasets consistently underestimate P amounts in mountainous regions. Using MSWEP V2, P was estimated to occur 15.5%, 12.3%, and 16.9% of the time on average for the global, land, and ocean domains, respectively. MSWEP V2 provides unique opportunities to explore spatiotemporal variations in P , improve our understanding of hydrological processes and their parameterization, and enhance hydrological model performance.