NOAA Oceanic and Atmospheric Research

The management and conservation of the world's oceans require synthesis of spatial data on the distribution and intensity of human activities and the overlap of their impacts on marine ecosystems. We developed an ecosystem-specific, multiscale spatial model to synthesize 17 global data sets of anthropogenic drivers of ecological change for 20 marine ecosystems. Our analysis indicates that no area is unaffected by human influence and that a large fraction (41%) is strongly affected by multiple drivers. However, large areas of relatively little human impact remain, particularly near the poles. The analytical process and resulting maps provide flexible tools for regional and global efforts to allocate conservation resources; to implement ecosystem-based management; and to inform marine spatial planning, education, and basic research.

The Climate Hazards group Infrared Precipitation with Stations (CHIRPS) dataset builds on previous approaches to 'smart' interpolation techniques and high resolution, long period of record precipitation estimates based on infrared Cold Cloud Duration (CCD) observations. The algorithm i) is built around a 0.05° climatology that incorporates satellite information to represent sparsely gauged locations, ii) incorporates daily, pentadal, and monthly 1981-present 0.05° CCD-based precipitation estimates, iii) blends station data to produce a preliminary information product with a latency of about 2 days and a final product with an average latency of about 3 weeks, and iv) uses a novel blending procedure incorporating the spatial correlation structure of CCD-estimates to assign interpolation weights. We present the CHIRPS algorithm, global and regional validation results, and show how CHIRPS can be used to quantify the hydrologic impacts of decreasing precipitation and rising air temperatures in the Greater Horn of Africa. Using the Variable Infiltration Capacity model, we show that CHIRPS can support effective hydrologic forecasts and trend analyses in southeastern Ethiopia.

A digital bathymetric map of the oceans with a horizontal resolution of 1 to 12 kilometers was derived by combining available depth soundings with high-resolution marine gravity information from the Geosat and ERS-1 spacecraft. Previous global bathymetric maps lacked features such as the 1600-kilometer-long Foundation Seamounts chain in the South Pacific. This map shows relations among the distributions of depth, sea floor area, and sea floor age that do not fit the predictions of deterministic models of subsidence due to lithosphere cooling but may be explained by a stochastic model in which randomly distributed reheating events warm the lithosphere and raise the ocean floor.

Distributions of Earth's species are changing at accelerating rates, increasingly driven by human-mediated climate change. Such changes are already altering the composition of ecological communities, but beyond conservation of natural systems, how and why does this matter? We review evidence that climate-driven species redistribution at regional to global scales affects ecosystem functioning, human well-being, and the dynamics of climate change itself. Production of natural resources required for food security, patterns of disease transmission, and processes of carbon sequestration are all altered by changes in species distribution. Consideration of these effects of biodiversity redistribution is critical yet lacking in most mitigation and adaptation strategies, including the United Nation's Sustainable Development Goals.

Meeting fundamental human needs while preserving Earth's life support systems will require an accelerated transition toward sustainability. A new field of sustainability science is emerging that seeks to understand the fundamental character of interactions between nature and society and to encourage those interactions along more sustainable trajectories. Such an integrated, place-based science will require new research strategies and institutional innovations to enable them especially in developing countries still separated by deepening divides from mainstream science. Sustainability science needs to be widely discussed in the scientific community, reconnected to the political agenda for sustainable development, and become a major focus for research.

We quantify the interannual-to-decadal variability of the heat content (mean temperature) of the world ocean from the surface through 3000-meter depth for the period 1948 to 1998. The heat content of the world ocean increased by ∼2 × 10 23 joules between the mid-1950s and mid-1990s, representing a volume mean warming of 0.06°C. This corresponds to a warming rate of 0.3 watt per meter squared (per unit area of Earth's surface). Substantial changes in heat content occurred in the 300- to 1000-meter layers of each ocean and in depths greater than 1000 meters of the North Atlantic. The global volume mean temperature increase for the 0- to 300-meter layer was 0.31°C, corresponding to an increase in heat content for this layer of ∼10 23 joules between the mid-1950s and mid-1990s. The Atlantic and Pacific Oceans have undergone a net warming since the 1950s and the Indian Ocean has warmed since the mid-1960s, although the warming is not monotonic.

The MODIS cloud mask uses several cloud detection tests to indicate a level of confidence that the MODIS is observing clear skies. It will be produced globally at single‐pixel resolution; the algorithm uses as many as 14 of the MODIS 36 spectral bands to maximize reliable cloud detection and to mitigate past difficulties experienced by sensors with coarser spatial resolution or fewer spectral bands. The MODIS cloud mask is ancillary input to MODIS land, ocean, and atmosphere science algorithms to suggest processing options. The MODIS cloud mask algorithm will operate in near real time in a limited computer processing and storage facility with simple easy‐to‐follow algorithm paths. The MODIS cloud mask algorithm identifies several conceptual domains according to surface type and solar illumination, including land, water, snow/ice, desert, and coast for both day and night. Once a pixel has been assigned to a particular domain (defining an algorithm path), a series of threshold tests attempts to detect the presence of clouds in the instrument field of view. Each cloud detection test returns a confidence level that the pixel is clear ranging in value from 1 (high) to zero (low). There are several types of tests, where detection of different cloud conditions relies on different tests. Tests capable of detecting similar cloud conditions are grouped together. While these groups are arranged so that independence between them is maximized, few, if any, spectral tests are completely independent. The minimum confidence from all tests within a group is taken to be representative of that group. These confidences indicate absence of particular cloud types. The product of all the group confidences is used to determine the confidence of finding clear‐sky conditions. This paper outlines the MODIS cloud masking algorithm. While no present sensor has all of the spectral bands necessary for testing the complete MODIS cloud mask, initial validation of some of the individual cloud tests is presented using existing remote sensing data sets.

Aerosols and clouds have important effects on Earth's climate through their effects on the radiation budget and the cycling of water between the atmosphere and Earth's surface. Limitations in our understanding of the global distribution and properties of aerosols and clouds are partly responsible for the current uncertainties in modeling the global climate system and predicting climate change. The CALIPSO satellite was developed as a joint project between NASA and the French space agency CNES to provide needed capabilities to observe aerosols and clouds from space. CALIPSO carries CALIOP, a two-wavelength, polarization-sensitive lidar, along with two passive sensors operating in the visible and thermal infrared spectral regions. CALIOP is the first lidar to provide long-term atmospheric measurements from Earth's orbit. Its profiling and polarization capabilities offer unique measurement capabilities. Launched together with the CloudSat satellite in April 2006 and now flying in formation with the A-train satellite constellation, CALIPSO is now providing information on the distribution and properties of aerosols and clouds, which is fundamental to advancing our understanding and prediction of climate. This paper provides an overview of the CALIPSO mission and instruments, the data produced, and early results.

We tested four land surface parameterization schemes against long‐term (5 months) area‐averaged observations over the 15 km × 15 km First International Satellite Land Surface Climatology Project (ISLSCP) Field Experiment (FIFE) area. This approach proved to be very beneficial to understanding the performance and limitations of different land surface models. These four surface models, embodying different complexities of the evaporation/hydrology treatment, included the traditional simple bucket model, the simple water balance (SWB) model, the Oregon State University (OSU) model, and the simplified Simple Biosphere (SSiB) model. The bucket model overestimated the evaporation during wet periods, and this resulted in unrealistically large negative sensible heat fluxes. The SWB model, despite its simple evaporation formulation, simulated well the evaporation during wet periods, but it tended to underestimate the evaporation during dry periods. Overall, the OSU model ably simulated the observed seasonal and diurnal variation in evaporation, soil moisture, sensible heat flux, and surface skin temperature. The more complex SSiB model performed similarly to the OSU model. A range of sensitivity experiments showed that some complexity in the canopy resistance scheme is important in reducing both the overestimation of evaporation during wet periods and underestimation during dry periods. Properly parameterizing not only the effect of soil moisture stress but also other canopy resistance factors, such as the vapor pressure deficit stress, is critical for canopy resistance evaluation. An overly simple canopy resistance that includes only soil moisture stress is unable to simulate observed surface evaporation during dry periods. Given a modestly comprehensive time‐dependent canopy resistance treatment, a rather simple surface model such as the OSU model can provide good area‐averaged surface heat fluxes for mesoscale atmospheric models.

Development is described of a Comprehensive Ocean-Atmosphere Data Set (COADS)—the result of a cooperative project to collect global weather observations taken near the ocean's surface since 1854, primarily from merchant ships, into a compact and easily used data set. As background, a historical overview is given of how archiving of these marine data has evolved from 1854, when systematic recording of shipboard meteorological and oceanographic observations was first established as an international activity. Input data sets used for COADS are described, as well as the processing steps used to pack input data into compact binary formats and to apply quality controls for identification of suspect weather elements and duplicate marine reports. Seventy-million unique marine reports for 1854–1979 were output from initial processing. Further processing is described, which created statistical summaries for each month of each year of the period, using 2° latitude × 2° longitude boxes. Monthly summary products are available giving 14 statistics (such as the median and the mean) for each of eight observed variables (air and sea-surface temperatures, scalar and vector wind, pressure, humidity, and cloudiness), plus 11 derived variables. Examples of known temporal, spatial, and methodological inhomogeneities in marine data, and plans for periodic updates to COADS, including an update through 1986 scheduled for completion by early 1988, are presented.

When intercomparing measurements made by remote sounders, it is necessary to make due allowance for the differing characteristics of the observing systems, particularly their averaging kernels and error covariances. We develop the methods required to do this, applicable to any kind of retrieval method, not only to optimal estimators. We show how profiles and derived quantities such as the total column of a constituent may be properly compared, yielding different averaging kernels. We find that the effect of different averaging kernels can be reduced if the retrieval or the derived quantity of one instrument is simulated using the retrieval of the other. We also show how combinations of measured signals can be found, which can be compared directly. To illustrate these methods, we apply them to two real instruments, calculating the expected amplitudes and variabilities of the diagnostics for a comparison of CO measurements made by a ground‐based Fourier Transform spectrometer (FTIR) and the “measurement of pollution in the troposphere” instrument (MOPITT), which is mounted on the EOS Terra platform. The main conclusions for this case are the following: (1) Direct comparison of retrieved profiles is not satisfactory, because the expected standard deviation of the difference is around half of the expected natural variability of the true atmospheric profiles. (2) Comparison of the MOPITT profile retrieval with a simulation using FTIR is much more useful, though still not ideal, with expected standard deviation of differences of around 20% of the expected natural variability. (3) Direct comparison of total columns gives an expected standard deviation of about 9%, while comparison of MOPITT with a simulation derived from FTIR improved this to 8%. (4) There is only one combination of measured signals that can be usefully compared. The difference is expected to have a standard deviation of about 5.5% of the expected natural variability, which is mostly due to noise.

The situation considered is that of a zonally symmetric model of the middle atmosphere subject to a given quasi-steady zonal force F̄, conceived to be the result of irreversible angular momentum transfer due to the upward propagation and breaking of Rossby and gravity waves together with any other dissipative eddy effects that may be relevant. The model's diabatic heating is assumed to have the qualitative character of a relaxation toward some radiatively determined temperature field. To the extent that the force F̄ may be regarded as given, and the extratropical angular momentum distribution is realistic, the extratropical diabatic mass flow across a given isentropic surface may be regarded as controlled exclusively by the F̄ distribution above that surface (implying control by the eddy dissipation above that surface and not, for instance, by the frequency of tropopause folding below). This “downward control” principle expresses a critical part of the dynamical chain of cause and effect governing the average rate at which photochemical products like ozone become available for folding into, or otherwise descending into, the extratropical troposphere. The dynamical facts expressed by the principle are also relevant, for instance, to understanding the seasonal-mean rate of upwelling of water vapor to the summer mesopause, and the interhemispheric differences in stratospheric tracer transport. The robustness of the principle is examined when F̄ is time-dependent. For a global-scale, zonally symmetric diabatic circulation with a Brewer-Dobson-like horizontal structure given by the second zonally symmetric Hough mode, with Rossby height HR = 13 km in an isothermal atmosphere with density scale height H = 7 km, the vertical partitioning of the unsteady part of the mass circulation caused by fluctuations in F̄ confined to a shallow layer LF̄ is always at least 84% downward. It is 90% downward when the force fluctuates sinusoidally on twice the radiative relaxation timescale and 95% if five times slower. The time-dependent adjustment when F̄ is changed suddenly is elucidated, extending the work of Dickinson (1968), when the atmosphere is unbounded above and below. Above the forcing, the adjustment is characterized by decay of the meridional mass circulation cell at a rate proportional to the radiative relaxation rate τr−1 divided by {1 + (4H2/HR2)}. This decay is related to the boundedness of the angular momentum that can be taken up by the finite mass of air above LF̄ without causing an ever-increasing departure from thermal wind balance. Below the forcing, the meridional mass circulation cell penetrates downward at a speed τr−1 HR2/H. For the second Hough mode, the time for downward penetration through one density scale height is about 6 days if the radiative relaxation time is 20 days, the latter being representative of the lower stratosphere. At any given altitude, a steady state is approached. The effect of a rigid lower boundary on the time-dependent adjustment is also considered. If a frictional planetary boundary layer is present then a steady state is ultimately approached everywhere, with the mass circulation extending downward from LF̄ and closing via the boundary layer. Satellite observations of temperature and ozone are used in conjunction with a radiative transfer scheme to estimate the altitudes from which the lower stratospheric diabatic vertical velocity is controlled by the effective F̄ in the real atmosphere. The data appear to indicate that about 80% of the effective control is usually exerted from below 40 km but with significant exceptions up to 70 km (in the high latitude southern hemispheric winter). The implications for numerical modelling of chemical transport are noted.

The state of ocean CO 2 uptake The ocean is an important sink for anthropogenic CO 2 and has absorbed roughly 30% of our emissions between the beginning of the industrial revolution and the mid-1990s. This effect is an important moderator of climate change, but can we count on it to remain as strong in the future? Gruber et al. calculated the ocean uptake of anthropogenic CO 2 for the interval from 1994 to 2007, which continued as expected. They also observed clear regional deviations from this pattern, suggesting that there is no guarantee that uptake will remain as robust with time. Science , this issue p. 1193

Regional climate models are important research tools available to scientists around the world, including in economically developing nations (EDNs). The Earth Systems Physics (ESP) group of the Abdus Salam International Centre for Theoretical Physics (ICTP) maintains and distributes a state-of-the-science regional climate model called the ICTP Regional Climate Model version 3 (RegCM3), which is currently being used by a large research community for a diverse range of climate-related studies. The RegCM3 is the central, but not only, tool of the ICTP-maintained Regional Climate Research Network (RegCNET) aimed at creating south–south and north–south scientific interactions on the topic of climate and associated impacts research and modeling. In this paper, RegCNET, RegCM3, and illustrative results from RegCM3 benchmark simulations applied over south Asia, Africa, and South America are presented. It is shown that RegCM3 performs reasonably well over these regions and is therefore useful for climate studies in EDNs.

Abstract Air quality is concerned with pollutants in both the gas phase and solid or liquid phases. The latter are referred to as aerosols, which are multifaceted agents affecting air quality, weather and climate through many mechanisms. Unlike gas pollutants, aerosols interact strongly with meteorological variables with the strongest interactions taking place in the planetary boundary layer (PBL). The PBL hosting the bulk of aerosols in the lower atmosphere is affected by aerosol radiative effects. Both aerosol scattering and absorption reduce the amount of solar radiation reaching the ground and thus reduce the sensible heat fluxes that drive the diurnal evolution of the PBL. Moreover, aerosols can increase atmospheric stability by inducing a temperature inversion as a result of both scattering and absorption of solar radiation, which suppresses dispersion of pollutants and leads to further increases in aerosol concentration in the lower PBL. Such positive feedback is especially strong during severe pollution events. Knowledge of the PBL is thus crucial for understanding the interactions between air pollution and meteorology. A key question is how the diurnal evolution of the PBL interacts with aerosols, especially in vertical directions, and affects air quality. We review the major advances in aerosol measurements, PBL processes and their interactions with each other through complex feedback mechanisms, and highlight the priorities for future studies.

The single most prominent signal in year-to-year climate variability is the Southern Oscillation, which is associated with fluctuations in atmospheric pressure at sea level in the tropics, monsoon rainfall, and wintertime circulation over North America and other parts of the extratropics. Although meteorologists have known about the Southern Oscillation for more than a half-century, its relation to the oceanic El Niño phenomenon was not recognized until the late 1960's, and a theoretical understanding of these relations has begun to emerge only during the past few years. The past 18 months have been characterized by what is probably the most pronounced and certainly the best-documented El Niño/Southern Oscillation episode of the past century. In this review meteorological aspects of the time history of the 1982-1983 episode are described and compared with a composite based on six previous events between 1950 and 1975, and the impact of these new observations on theoretical interpretations of the event is discussed.

BACKGROUND: The rising temperature of the world's oceans has become a major threat to coral reefs globally as the severity and frequency of mass coral bleaching and mortality events increase. In 2005, high ocean temperatures in the tropical Atlantic and Caribbean resulted in the most severe bleaching event ever recorded in the basin. METHODOLOGY/PRINCIPAL FINDINGS: Satellite-based tools provided warnings for coral reef managers and scientists, guiding both the timing and location of researchers' field observations as anomalously warm conditions developed and spread across the greater Caribbean region from June to October 2005. Field surveys of bleaching and mortality exceeded prior efforts in detail and extent, and provided a new standard for documenting the effects of bleaching and for testing nowcast and forecast products. Collaborators from 22 countries undertook the most comprehensive documentation of basin-scale bleaching to date and found that over 80% of corals bleached and over 40% died at many sites. The most severe bleaching coincided with waters nearest a western Atlantic warm pool that was centered off the northern end of the Lesser Antilles. CONCLUSIONS/SIGNIFICANCE: Thermal stress during the 2005 event exceeded any observed from the Caribbean in the prior 20 years, and regionally-averaged temperatures were the warmest in over 150 years. Comparison of satellite data against field surveys demonstrated a significant predictive relationship between accumulated heat stress (measured using NOAA Coral Reef Watch's Degree Heating Weeks) and bleaching intensity. This severe, widespread bleaching and mortality will undoubtedly have long-term consequences for reef ecosystems and suggests a troubled future for tropical marine ecosystems under a warming climate.

Earth's energy imbalance (EEI) drives the ongoing global warming and can best be assessed across the historical record (that is, since 1960) from ocean heat content (OHC) changes. An accurate assessment of OHC is a challenge, mainly because of insufficient and irregular data coverage. We provide updated OHC estimates with the goal of minimizing associated sampling error. We performed a subsample test, in which subsets of data during the data-rich Argo era are colocated with locations of earlier ocean observations, to quantify this error. Our results provide a new OHC estimate with an unbiased mean sampling error and with variability on decadal and multidecadal time scales (signal) that can be reliably distinguished from sampling error (noise) with signal-to-noise ratios higher than 3. The inferred integrated EEI is greater than that reported in previous assessments and is consistent with a reconstruction of the radiative imbalance at the top of atmosphere starting in 1985. We found that changes in OHC are relatively small before about 1980; since then, OHC has increased fairly steadily and, since 1990, has increasingly involved deeper layers of the ocean. In addition, OHC changes in six major oceans are reliable on decadal time scales. All ocean basins examined have experienced significant warming since 1998, with the greatest warming in the southern oceans, the tropical/subtropical Pacific Ocean, and the tropical/subtropical Atlantic Ocean. This new look at OHC and EEI changes over time provides greater confidence than previously possible, and the data sets produced are a valuable resource for further study.

One of ecology's grand challenges is developing general rules to explain and predict highly complex systems. Understanding and predicting ecological processes from species' traits has been considered a 'Holy Grail' in ecology. Plant functional traits are increasingly being used to develop mechanistic models that can predict how ecological communities will respond to abiotic and biotic perturbations and how species will affect ecosystem function and services in a rapidly changing world; however, significant challenges remain. In this review, we highlight recent work and outstanding questions in three areas: (i) selecting relevant traits; (ii) describing intraspecific trait variation and incorporating this variation into models; and (iii) scaling trait data to community- and ecosystem-level processes. Over the past decade, there have been significant advances in the characterization of plant strategies based on traits and trait relationships, and the integration of traits into multivariate indices and models of community and ecosystem function. However, the utility of trait-based approaches in ecology will benefit from efforts that demonstrate how these traits and indices influence organismal, community, and ecosystem processes across vegetation types, which may be achieved through meta-analysis and enhancement of trait databases. Additionally, intraspecific trait variation and species interactions need to be incorporated into predictive models using tools such as Bayesian hierarchical modelling. Finally, existing models linking traits to community and ecosystem processes need to be empirically tested for their applicability to be realized.

Very little is known about how environmental changes such as increasing temperature affect disease dynamics in the ocean, especially at large spatial scales. We asked whether the frequency of warm temperature anomalies is positively related to the frequency of coral disease across 1,500 km of Australia's Great Barrier Reef. We used a new high-resolution satellite dataset of ocean temperature and 6 y of coral disease and coral cover data from annual surveys of 48 reefs to answer this question. We found a highly significant relationship between the frequencies of warm temperature anomalies and of white syndrome, an emergent disease, or potentially, a group of diseases, of Pacific reef-building corals. The effect of temperature was highly dependent on coral cover because white syndrome outbreaks followed warm years, but only on high (>50%) cover reefs, suggesting an important role of host density as a threshold for outbreaks. Our results indicate that the frequency of temperature anomalies, which is predicted to increase in most tropical oceans, can increase the susceptibility of corals to disease, leading to outbreaks where corals are abundant.