PatriNat

There have been five Mass Extinction events in the history of Earth's biodiversity, all caused by dramatic but natural phenomena. It has been claimed that the Sixth Mass Extinction may be underway, this time caused entirely by humans. Although considerable evidence indicates that there is a biodiversity crisis of increasing extinctions and plummeting abundances, some do not accept that this amounts to a Sixth Mass Extinction. Often, they use the IUCN Red List to support their stance, arguing that the rate of species loss does not differ from the background rate. However, the Red List is heavily biased: almost all birds and mammals but only a minute fraction of invertebrates have been evaluated against conservation criteria. Incorporating estimates of the true number of invertebrate extinctions leads to the conclusion that the rate vastly exceeds the background rate and that we may indeed be witnessing the start of the Sixth Mass Extinction. As an example, we focus on molluscs, the second largest phylum in numbers of known species, and, extrapolating boldly, estimate that, since around AD 1500, possibly as many as 7.5-13% (150,000-260,000) of all ~2 million known species have already gone extinct, orders of magnitude greater than the 882 (0.04%) on the Red List. We review differences in extinction rates according to realms: marine species face significant threats but, although previous mass extinctions were largely defined by marine invertebrates, there is no evidence that the marine biota has reached the same crisis as the non-marine biota. Island species have suffered far greater rates than continental ones. Plants face similar conservation biases as do invertebrates, although there are hints they may have suffered lower extinction rates. There are also those who do not deny an extinction crisis but accept it as a new trajectory of evolution, because humans are part of the natural world; some even embrace it, with a desire to manipulate it for human benefit. We take issue with these stances. Humans are the only species able to manipulate the Earth on a grand scale, and they have allowed the current crisis to happen. Despite multiple conservation initiatives at various levels, most are not species oriented (certain charismatic vertebrates excepted) and specific actions to protect every living species individually are simply unfeasible because of the tyranny of numbers. As systematic biologists, we encourage the nurturing of the innate human appreciation of biodiversity, but we reaffirm the message that the biodiversity that makes our world so fascinating, beautiful and functional is vanishing unnoticed at an unprecedented rate. In the face of a mounting crisis, scientists must adopt the practices of preventive archaeology, and collect and document as many species as possible before they disappear. All this depends on reviving the venerable study of natural history and taxonomy. Denying the crisis, simply accepting it and doing nothing, or even embracing it for the ostensible benefit of humanity, are not appropriate options and pave the way for the Earth to continue on its sad trajectory towards a Sixth Mass Extinction.

Biological invasion is increasingly recognized as one of the greatest threats to biodiversity. Using ensemble forecasts from species distribution models to project future suitable areas of the 100 of the world's worst invasive species defined by the International Union for the Conservation of Nature, we show that both climate and land use changes will likely cause drastic species range shifts. Looking at potential spatial aggregation of invasive species, we identify three future hotspots of invasion in Europe, northeastern North America, and Oceania. We also emphasize that some regions could lose a significant number of invasive alien species, creating opportunities for ecosystem restoration. From the list of 100, scenarios of potential range distributions show a consistent shrinking for invasive amphibians and birds, while for aquatic and terrestrial invertebrates distributions are projected to substantially increase in most cases. Given the harmful impacts these invasive species currently have on ecosystems, these species will likely dramatically influence the future of biodiversity.

Abstract Aim Global changes are predicted to have severe consequences for biodiversity; 34 biodiversity hotspots have become international priorities for conservation, with important efforts allocated to their preservation, but the potential effects of global changes on hotspots have so far received relatively little attention. We investigate whether hotspots are quantitatively and qualitatively threatened to the same order of magnitude by the combined effects of global changes. Location Worldwide, in 34 biodiversity hotspots. Methods We quantify (1) the exposure of hotspots to climate change, by estimating the novelty of future climates and the disappearance of extant climates using climate dissimilarity analyses, (2) each hotspot's vulnerability to land modification and degradation by quantifying changes in land‐cover variables over the entire habitat, and (3) the future suitability of distribution ranges of ‘100 of the world's worst invasive alien species’, by characterizing the combined effects of climate and land‐use changes on the future distribution ranges of these species. Results Our findings show that hotspots may experience an average loss of 31% of their area under analogue climate, with some hotspots more affected than others (e.g. P olynesia– M icronesia). The greatest climate change was projected in low‐latitude hotspots. The hotspots were on average suitable for 17% of the considered invasive species. Hotspots that are mainly islands or groups of islands were disproportionally suitable for a high number of invasive species both currently and in the future. We also showed that hotspots will increase their area of pasture in the future. Finally, combining the three threats, we identified the A tlantic forest, C ape F loristic R egion and P olynesia– M icronesia as particularly vulnerable to global changes. Main conclusions Given our estimates of hotspot vulnerability to changes, close monitoring is now required to evaluate the biodiversity responses to future changes and to test our projections against observations.

Abstract In this paper, we investigate how climate, land use, habitat characteristics, and socioeconomic activities contribute to predict the current potential distributions of the “100 among the world's worst invasive alien species”. We calculated the predictive power of each of the 41 variables for the 95 species including a large number of plants, vertebrates and invertebrates. We then calibrated the species distribution models with a set of appropriate variables for each invasive alien species to predict the potential distribution of these species and identify the major regions of origin of the invasive alien species. We found that climate variables were primarily predictors of the distribution of the global invaders studied. In addition, the habitat characteristics were also important predictors following by the socioeconomic variables such as the nearest distance to airports, seaports and human population density. We show that the potential areas at the highest risk of invasions from these species are located in Western Europe, Eastern United States, Central America, the eastern coast of Australia, and some Indonesian islands. We argue that these potential hotspots of invasions should be monitored in priority to prevent new invasions from these species. This study provides evidence of the importance of considering both habitat characteristics, socioeconomic and climate change factors for the current and future predictions of biological invasions.

Abstract Background Ecological research now deals increasingly with the effects of noise pollution on biodiversity. Indeed, many studies have shown the impacts of anthropogenic noise and concluded that it is potentially a threat to the persistence of many species. The present work is a systematic map of the evidence of the impacts of all anthropogenic noises (industrial, urban, transportation, etc.) on biodiversity. This report describes the mapping process and the evidence base with summary figures and tables presenting the characteristics of the selected articles. Methods The method used was published in an a priori protocol. Searches included peer-reviewed and grey literature published in English and French. Two online databases were searched using English terms and search consistency was assessed with a test list. Supplementary searches were also performed (using search engines, a call for literature and searching relevant reviews). Articles were screened through three stages (titles, abstracts, full-texts). No geographical restrictions were applied. The subject population included all wild species (plants and animals excluding humans) and ecosystems. Exposures comprised all types of man-made sounds in terrestrial and aquatic media, including all contexts and sound origins (spontaneous or recorded sounds, in situ or laboratory studies, etc.). All relevant outcomes were considered (space use, reproduction, communication, etc.). Then, for each article selected after full-text screening, metadata were extracted on key variables of interest (species, types of sound, outcomes, etc.). Review findings Our main result is a database that includes all retrieved literature on the impacts of anthropogenic noise on species and ecosystems, coded with several markers (sources of noise, species concerned, types of impacts, etc.). Our search produced more than 29,000 articles and 1794 were selected after the three screening stages (1340 studies (i.e. primary research), 379 reviews, 16 meta-analyses). Some articles (n = 19) are written in French and all others are in English. This database is available as an additional file of this report. It provides an overview of the current state of knowledge. It can be used for primary research by identifying knowledge gaps or in view of further analysis, such as systematic reviews. It can also be helpful for scientists and researchers as well as for practitioners, such as managers of transportation infrastructure. Conclusion The systematic map reveals that the impacts of anthropogenic noises on species and ecosystems have been researched for many years. In particular, some taxonomic groups (mammals, birds, fishes), types of noise (transportation, industrial, abstract) and outcomes (behavioural, biophysiological, communication) have been studied more than others. Conversely, less knowledge is available on certain species (amphibians, reptiles, invertebrates), noises (recreational, military, urban) and impacts (space use, reproduction, ecosystems). The map does not assess the impacts of anthropogenic noise, but it can be the starting point for more thorough synthesis of evidence. After a critical appraisal, the included reviews and meta-analyses could be exploited, if reliable, to transfer the already synthesized knowledge into operational decisions to reduce noise pollution and protect biodiversity.

Abstract Background The role of linear transportation infrastructures (roads, railways, oil and gas pipelines, power lines, rivers and canals) in fragmenting natural habitats is fully acknowledged. Up to now, the potential of linear transportation infrastructures verges (road and railway embankments, strips of grass under power lines or above buried pipelines, or waterway banks) as habitat or corridor for biodiversity, remains controversial. In a context of decreasing natural habitats, the opportunities of anthropogenic areas for contributing to wildlife conservation have to be considered. The present paper is the first synthesis of evidence about the potential of linear transportation infrastructure verges as corridor and/or habitat for insects in temperate landscapes. Methods A systematic literature survey was made using two online publication databases, a search engine and by sending a call for literature to subject experts. Identified articles were successively screened for relevance on titles, abstracts and full texts using criteria detailed in an a priori protocol. We then used six specific questions to categorize and to critically appraise the retained studies. These questions encompassed the potential of verges as habitats and corridors for insects, and the effects of management and landscape context on these potentialities. A user-friendly database was created to sort the studies with low and medium susceptibility to bias. We used these studies to synthesize results of each specific question in a narrative synthesis. Finally, studies that met the meta-analysis requirements were used for a quantitative synthesis. Results Our searches identified 64,206 articles. After critical appraisal, 91 articles that reported 104 studies were included in our review. Almost all of them had “control-impact” design, only two studies used “before-after-control-impact” design, and one study used “before-after” design. In some cases, artificialization of transportation infrastructures lowered insect biodiversity while vegetation restoration had a moderate positive effect; the trend remained unclear for mowing/grazing practices. Urbanization and agriculture in the surroundings tended to lower the biodiversity hosted by verges, while natural and forested areas tended to promote it. No study dealt with the influence of management or surrounding landscape on insect dispersal along the verge. The small number of studies that compared the dispersal along verges and in habitats away from transportation infrastructures, together with the inconsistencies of their results, prevented us from drawing conclusions. Meta-analyses were performed on 709 cases from 34 primary studies that compared biodiversity in verges vs. other habitats. Overall insect species richness did not differ between LTI verges and compared habitats. Globally, insect abundance seemed higher on LTI verges than in compared habitats, a result driven by the higher abundance of pollinators and primary consumers on non-highway road verges than in habitats away from roads. Conclusions A major knowledge gap regarding the potential of linear transportation infrastructure verges as corridors for insects has been identified. Thus, we encourage more research on this topic. Infrastructure practitioners could benefit from our results about linear transportation infrastructure verges as habitat for certain taxa and about the impact of their management practices on insect abundance and species richness.

Refined baseline inventories of non-indigenous species (NIS) are set per European Union Member State (MS), in the context of the Marine Strategy Framework Directive (MSFD). The inventories are based on the initial assessment of the MSFD (2012) and the updated data of the European Alien Species Information Network, in collaboration with NIS experts appointed by the MSs. The analysis revealed that a large number of NIS was not reported from the initial assessments. Moreover, several NIS initially listed are currently considered as native in Europe or were proven to be historical misreportings. The refined baseline inventories constitute a milestone for the MSFD Descriptor 2 implementation, providing an improved basis for reporting new NIS introductions, facilitating the MSFD D2 assessment. In addition, the inventories can help MSs in the establishment of monitoring systems of targeted NIS, and foster cooperation on monitoring of NIS across or within shared marine subregions.

Invasive alien species are a major worldwide driver of biodiversity change. The current study lists verified records of non-indigenous species (NIS) in European marine waters until 2020, with the purpose of establishing a baseline, assessing trends, and discussing appropriate threshold values for good environmental status (GES) according to the relevant European legislation. All NIS records were verified by national experts and trends are presented in six-year assessment periods from 1970 to 2020 according to the European Union Marine Strategy Framework Directive. Altogether, 874 NIS have been introduced to European marine waters until 2020 with the Mediterranean Sea and North-East Atlantic Ocean hosting most of the introductions. Overall, the number of new introductions has steadily increased since 2000. The annual rate of new introductions reached 21 new NIS in European seas within the last six-year assessment period (2012–2017). This increase is likely due to increased human activities and research efforts that have intensified during the early 21st century within European Seas. As Europe seas are not environmentally, nor geographically homogenous, the setting of threshold values for assessing GES requires regional expertise. Further, once management measures are operational, pathway-specific threshold values would enable assessing the effectiveness of such measures.

Artificial light at night (ALAN) has been massively deployed worldwide and has become a major environmental pressure for biodiversity, especially contributing to habitat loss and landscape fragmentation. To mitigate these latter, green and blue infrastructure policies have been developed throughout the world based on the concept of ecological networks, a set of suitable interconnected habitats. However, currently, these nature conservation policies hardly consider the adverse effects of ALAN. Here, we promote the integration of darkness quality within the 'green and blue infrastructure', to implement a ‘dark infrastructure’. Dark infrastructure should be identified, preserved and restored at different territorial levels to guarantee ecological continuities where the night and its rhythms are as natural as possible. For this purpose, we propose an operational 4-steps process that includes 1) Mapping of light pollution in all its forms and dimensions in relation to biodiversity, 2) Identifying the dark infrastructure starting or not from the already identified green/blue infrastructure, 3) Planning actions to preserve and restore the dark infrastructure by prioritizing lighting sobriety and not only energy saving, 4) Assessing the effectiveness of the dark infrastructure with appropriate indicators. Dark infrastructure projects have already been created (for example in France and Switzerland) and can serve as case studies for both urban and natural areas. The deployment of dark infrastructure raises many operational and methodological questions and stresses some knowledge gaps that still need to be addressed, such as the exhaustive mapping of light pollution and the characterization of sensitivity thresholds for model species.

This work presents refined, updated subregional and regional non-indigenous species (NIS) inventories for the Mediterranean Sea, validated by national and taxonomic experts, with species records observed until December 2020. These datasets will be used as the baselines for the implementation of the Integrated Monitoring and Assessment Programme for the Mediterranean (IMAP) and the Mediterranean Quality Status Report 2023. In total, 1006 non-indigenous species have been found in Mediterranean marine and brackish waters. The highest numbers of NIS were observed in Israel, Türkiye, Lebanon and Italy. Approximately 45 species were categorized as data deficient, either due to lack of consensus on their alien status or the validity of their identification. Polychaeta, Foraminifera and macroalgae were the groups with the highest numbers of controversial species. There was a general increase in the yearly rate of new NIS introductions after the late 1990s, which appears to be slowing down in the last decade, but this may be confounded by reporting lags and differential research efforts. Between 1970 and 2020 there has been a steep increase in the proportion of shared species present throughout all four Mediterranean subregions, which are predominantly transported via shipping and recreational boating. While Lessepsian species are gradually spreading westwards and northwards, there is still a considerable invasion debt accumulating in the eastern and central Mediterranean.

The protection of key areas for biodiversity at sea is not as widespread as on land and research investment is necessary to identify biodiversity hotspots in the open ocean. Spatially explicit conservation measures such as the creation of representative networks of marine protected areas (MPAs) is a critical step towards the conservation and management of marine ecosystems, as well as to improve public awareness. Conservation efforts in ecologically rich and threatened ecosystems are specially needed. This is particularly urgent for the Mediterranean marine biodiversity, which includes highly mobile marine vertebrates. Here, we studied the at sea distribution of one of the most endangered Mediterranean seabird, the critically endangered Balearic shearwater Puffinus mauretanicus. Present knowledge, from vessel-based surveys, suggests that this species has a coastal distribution over the productive Iberian shelf in relation to the distribution of their main prey, small pelagic fish. We used miniaturised satellite transmitters to determine the key marine areas of the southern population of Balearic shearwaters breeding on Eivissa and spot the spatial connections between breeding and key marine areas. Our tracking study indicates that Balearic shearwaters do not only forage along the Iberian continental shelf but also in more distant marine areas along the North African coast, in particular W of Algeria, but also NE coast of Morocco. Birds recurrently visit these shelf areas at the end of the breeding season. Species distribution modelling identified chlorophyll a as the most important environmental variable in defining those oceanographic features characterizing their key habitats in the western Mediterranean. We identified persistent oceanographic features across time series available in the study area and discuss our results within the current conservation scenario in relation to the ecology of the species.

The Northeast Atlantic, a highly productive maritime area, has been exposed to a wide range of direct human pressures, such as fishing, shipping, coastal development, pollution, and non-indigenous species (NIS) introductions, in addition to anthropogenically-driven global climate change. Nonetheless, this regional sea supports a high diversity of species and habitats, whose functioning provides a variety of ecosystem services, essential for human welfare. In 2017, OSPAR, the Northeast Atlantic Regional Seas Commission, delivered an assessment of marine biodiversity for the Northeast Atlantic. This assessment examined biodiversity indicators separately to identify changes in Northeast Atlantic biodiversity, but stopped short of determining the status of biodiversity for many species and habitats. Here, we expand on this work and for the first time, a semi-quantitative approach is applied to evaluate holistically the state of Northeast Atlantic marine biodiversity across marine food webs, from plankton to top predators, via fish, pelagic and benthic habitats, including xeno-biodiversity (i.e. NIS). Our analysis reveals widespread degradation in marine ecosystems and biodiversity, particularly for marine birds and coastal bottlenose dolphins, as well as for benthic habitats and fish in some regions. The poor biodiversity status of these ecosystem components is likely the result of cumulative effects of human activities, such as habitat destruction or disturbance, overexploitation, eutrophication, the introduction of NIS, and climate change. Bright spots are also revealed, such as recent signs of recovery in some fish and marine bird communities and recovery in harbour and grey seal populations and the condition of coastal benthic communities in some regions. The status of many indicators across all ecosystem components, but particularly for the novel pelagic habitats, food webs and NIS indicators, however, remains uncertain due to gaps in data, unclear pressure-state relationships, and the non-linear influence of some pressures on biodiversity indicators. Improving monitoring and data access and increasing understanding of pressure-state relationships, including those that are non-linear, is therefore a priority for enabling future assessments, as is consistent and stable resourcing for expert involvement.

Abstract Background Linear transportation infrastructures (roads, railways, oil and gas pipelines, powerlines and waterways) generate well documented fragmenting effects on species habitats. However, the potential of verges of linear transportation infrastructures (road and railway embankments, strips of grass under power lines or above buried pipelines, or waterway banks) as habitat or corridor for biodiversity, remains controversial. In a context of constant loss of natural habitats, the opportunities of anthropogenic areas for compensating the loss of biodiversity they generated have to be considered. This paper is the first synthesis of evidence addressing this topic for vertebrates (mammals, birds, amphibians and reptiles) in temperate ecosystems. Methods We conducted a systematic literature survey using two online publication databases, three search engines, specialist websites, and by sending a call for literature to subject experts. We successively screened the articles for relevance on titles, abstracts and full texts using criteria detailed in an a priori protocol. We then used six specific questions to categorize the retained studies and to critically appraise them. These questions encompassed the potential of verges as habitats and corridors for vertebrates, and the effects of landscape and management on these potentialities. We critically appraised all studies to assess their risk of bias and created a database of the studies with low and medium risk of bias. We synthesized results for each specific question in narrative syntheses. Finally, studies that met meta-analysis requirements were used for quantitative syntheses. Results Our initial searches identified 83,565 documents. After critical appraisal, we retained 119 documents that reported 128 studies. Most studies were conducted in Europe (49%) and in the United States of America (22%), and were about mammals (61%) and birds (20%). Results from the narrative synthesis and meta-analyses converged and revealed that the potential of linear transportation infrastructures verges to constitute a habitat for vertebrate species varies according to the infrastructure and the biological group considered. Especially, highway verges may be a refuge for small mammals but seems detrimental to birds. The potential also varied depending on the landscape considered, with urbanisation being related to lower biodiversity hosted by verges. We found a wide variety of verge management practices with few studies on each practice, which prevented us from drawing general conclusions. Likewise, we found too few studies assessing the corridor potential of verges to be able to fully conclude although this potential seems to exist. We did not find any study assessing the effect of landscape context or management on the role of corridor of verges. Conclusions We identified a major knowledge gap regarding the potential of linear transportation infrastructure verges as corridors for vertebrates, and when they exist studies rarely directly measured movements on verges. We thus encourage more research on this topic and the development of protocols that enable direct measures of vertebrate movements. The effect of management practices on the role of habitat of verges also deserves further investigations, and research efforts should be coordinated to focus on one specific practice (e.g. vegetation management).

International audience

Ancientness and maturity are two major qualities of forest ecosystems. They are components of naturalness and are affected by human impact. These qualities and the associated terms are often mixed up and incorrectly used. We have carried out a synthesis in order to propose an adapted French terminology based on international literature. The topics of ancientness and maturity for biodiversity and soil characteristics are explained. This review leads us to submit different potential thresholds for ancientness and maturity. An analysis on ancientness and maturity on forest data for France leads to the conclusion that about 29% of all forests can be considered "ancient woodland", and less than 3% of the even-age forest is older than the harvesting age.

Abstract Foxes and cats are the most abundant medium‐sized urban carnivores. To date, however, there has been a lack of effort to synthesize data on the spatial and trophic resources used by these two carnivores, despite the importance of this information for assessing their similarity and roles in urban food webs. In this paper, we first synthesize all available information on the trophic patterns and home‐range size of these two predators based on a total of 91 studies. Second, we conduct statistical analyses to test the influence of environmental and biological variables such as regional differences, habitat characteristics, age, and sexual status on their home‐range size and diet patterns within urban habitats, and then evaluate the methods used to investigate these components. Our findings highlight the lack of studies that simultaneously monitor the diet and home‐range size of both predators within urban habitats. To the best of our knowledge, this is the first study to compare fox and cat home‐range size and diet. Foxes exhibited larger ranges than cats, while intact cats showed larger home ranges than desexed cats. Diet diversity obtained for both predators confirmed their trophic plasticity within urban habitats. Both predators consumed fewer mammals and invertebrates in highly disturbed habitats compared to medium ones. We also found that the procedure of data acquisition significantly influenced fox and cat home‐range sizes. In terms of diet, the type of recovered samples had a significant effect on the diet composition of both predators. To improve our understanding of the relative impact of these two urban carnivores on urban wildlife, we recommend simultaneously studying both species in future studies. Moreover, methodological standards for both diet and home‐range size studies are needed to allow comparisons.

Abstract Aim The influence of niche and neutral mechanisms on the assembly of ecological communities have long been debated. However, we still have a limited knowledge on their relative importance to explain patterns of diversity across latitudinal gradients (LDG). Here, we investigate the extent to which these ecological mechanisms contribute to the LDG of reef fishes. Location Eastern Atlantic Ocean. Taxon Reef‐associated ray‐finned fishes. Methods We combined abundance data across ~60° of latitude with functional trait data and phylogenetic trees. A null model approach was used to decouple the influence of taxonomic diversity (TD) on functional (FD) and phylogenetic (PD) diversity. Standardized effect sizes (SES FD and SES PD) were used to explore patterns of overdispersion, clustering and randomness. Information theoretic approaches were used to investigate the role of large‐ (temperature, geographic isolation, nitrate and net primary productivity) and local‐scale (human population and depth) drivers. We further assessed the role of demographic stochasticity and its interaction with species trophic identity and dispersal capacity. Results Taxonomic diversity peaked at ~15°–20°N, with a second mode of lower magnitude at ~45°N; a pattern that was predicted by temperature, geographic isolation and productivity. Tropical regions displayed a higher proportion of overdispersed assemblages, whilst clustering increased towards temperate regions. Phylogenetic and functional overdispersion were associated with warmer, productive and isolated regions. Demographic stochasticity also contributed largely to community assembly, independently of ecoregions, although variation was dependent on the trophic identity and body size of species. Main conclusions Niche‐based processes linking thermal and resource constraints to local coexistence mechanisms have contributed to the LDG in reef fishes. These processes do not act in isolation, stressing the importance of understanding interactions between deterministic and stochastic factors driving community structure in the face of rapid biodiversity change.

In the present paper, we describe LisBeth, a newly published phylogenetic program. LisBeth implements the cladistic three-item analysis for systematics and biogeography. We show how LisBeth handles character representation, character analysis, exact search functions, reconstruction of the intersection tree and other features, such as retention index, completeness index, character history and link with other programs such as PAUP*, version 4.0b10, TNT and Xper2. Using LisBeth, we reanalyze the phylogeny based on morphological characters of the order Gadiformes (Teleostei, Paracanthopterygii) published by Endo (2002) and compare our results. We also describe the generation of hypotheses of homology following Endo's guidelines versus 3ia representation schemes. We compare the topologies of all results and show the implications of the interpretation of character history.

Disentangling the multiple factors controlling species diversity is a major challenge in ecology. Island biogeography and environmental filtering are two influential theories emphasizing respectively island size and isolation, and the abiotic environment, as key drivers of species richness. However, few attempts have been made to quantify their relative importance and investigate their mechanistic basis. Here, we applied structural equation modelling, a powerful method allowing test of complex hypotheses involving multiple and indirect effects, on an island‐like system of 22 French Guianan neotropical inselbergs covered with rock‐savanna. We separated the effects of size (rock‐savanna area), isolation (density of surrounding inselbergs), environmental filtering (rainfall, altitude) and dispersal filtering (forest‐matrix openness) on the species richness of all plants and of various ecological groups (terrestrial versus epiphytic, small‐scale versus large‐scale dispersal species). We showed that the species richness of all plants and terrestrial species was mainly explained by the size of rock‐savanna vegetation patches, with increasing richness associated with higher rock‐savanna area, while inselberg isolation and forest‐matrix openness had no measurable effect. This size effect was mediated by an increase in terrestrial‐habitat diversity, even after accounting for increased sampling effort. The richness of epiphytic species was mainly explained by environmental filtering, with a positive effect of rainfall and altitude, but also by a positive size effect mediated by enhanced woody‐plant species richness. Inselberg size and environmental filtering both explained the richness of small‐scale and large‐scale dispersal species, but these ecological groups responded in opposite directions to altitude and rainfall, that is positively for large‐scale and negatively for small‐scale dispersal species. Our study revealed both habitat diversity associated with island size and environmental filtering as major drivers of neotropical inselberg plant diversity and showed the importance of plant species growth form and dispersal ability to explain the relative importance of each driver.

Efficient biodiversity monitoring programs are essential to assess the ecological status of marine ecosystems. In the context of the European Marine Strategy Framework Directive (MFSD), coastal rocky reef fish assemblages are most often surveyed using underwater visual census (UVC). While UVC is well-suited to monitor conspicuous fish, it underestimates hidden, vagrant and/or elusive fishes. Hence, complementary methods are needed to survey the whole fish assemblage. Environmental DNA (eDNA) metabarcoding is increasingly used in this context. Here, we evaluated the effectiveness of eDNA metabarcoding collected from water to provide sound and complementary diversity data to UVC in support of the MFSD. Both methods were used to examine coastal rocky reef fish assemblages in one bay of Brittany (France), along an inshore-offshore gradient and during two seasons. eDNA metabarcoding was carried out following different water sampling strategies: small water volumes (2L) from stationary sampling at the surface and bottom and large water volume (30L) filtered at the surface while moving in close vicinity of the sampling site. A total of 93 (including 57 species) and 33 (including 27 species) taxa were detected with eDNA metabarcoding and UVC, respectively. Eleven species were only recorded by UVC, a result explained for nine of them by a lack of taxonomic resolution of the markers used (12S and 16S) and/or the unavailability of reference sequences. eDNA metabarcoding allows to recover species expected to be present, such as demersal rocky specialist fishes, at a similar species richness level than UVC (14 species for UVC and 12 species for eDNA). It however also unveiled other taxa (pelagic, bentho-pelagic and others demersal fishes) inhabiting the bay and rarely reported through UVC (18 species for UVC and 45 species for eDNA). Despite these differences in species identified by UVC vs. eDNA, both survey methods were consistent in characterizing spatio-temporal variabilities of fish assemblages, highlighting strong site fidelity of eDNA to the source communities. In a well-mixed water column, the eDNA signal was very homogeneous, allowing the use of the cost-effective small water volume eDNA sampling method. eDNA metabarcoding is thus particularly promising to study coastal rocky reef assemblages, and when coupled with UVC, it improves monitoring surveys.