TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools.

C, Monat; S, Padmarasu; T, Lux; T, Wicker; H, Gundlach; A, Himmelbach; J, Ens; C, Li; GJ, Muehlbauer; AH, Schulman; R, Waugh; I, Braumann; C, Pozniak; U, Scholz; KFX, Mayer; M, Spannagl; N, Stein; M, Mascher

doi:10.1186/s13059-019-1899-5

Public

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools.

Shared by NobleBlocks on Dec 18, 2019 • 12:00 AM UTC

Authors:

Monat C

Padmarasu S

Lux T

Abstract

Chromosome-scale genome sequence assemblies underpin pan-genomic studies. Recent genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied on the commercial closed-source assembly algorithm DeNovoMagic. We present TRITEX, an open-source computational workflow that comb...

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